DOI QR코드

DOI QR Code

Diversity and Genetic Relationships among Seven West African Goat Breeds

  • Missohou, A. (Service de Zootechnie-Alimentation. Ecole Inter-Etats des Sciences et Medecine Veterinaires) ;
  • Talaki, E. (Service de Zootechnie-Alimentation. Ecole Inter-Etats des Sciences et Medecine Veterinaires) ;
  • Laminou, I. Maman (Service de Zootechnie-Alimentation. Ecole Inter-Etats des Sciences et Medecine Veterinaires)
  • Received : 2005.11.29
  • Accepted : 2006.03.18
  • Published : 2006.09.01

Abstract

This study was carried out to determine the genetic relationships among seven west African goat breeds : Casamance Goat (Kolda, Senegal), Labe Goat (Fouta Djallon, Guinea), three Sahel Goat (Djoloff, Senegal ; Maradi, Niger; Gorgol, Mauritania) red Sokoto Goat (Maradi, Niger) and Guera goat (Atar, Mauritania).The polymorphism of six microsatellites and the ${\alpha}_{s1}$-casein locus was analysed. The six microsatellite loci were polymorphic with a mean number of alleles ranging from 2.71 to 4.0. At the ${\alpha}_{s1}$-casein locus, A and B were the most frequent alleles, which are known to be associated with a high level of protein synthesis. A neighbour-joining tree and a Principal Component Analysis were performed and the reliability of both methods was tested. Our study shows that the genetic relationships among the breeds analysed correspond to their geographical distribution and in addition, that the Labe Goat is strongly separated from the other breeds. Among the seven markers used, four have an effect on the distribution of breeds while three seem to be non-informative.

Keywords

References

  1. Barker, J. S., S. S. Moore, D. J. S. Hetzel, D. Evans, S. G. Tan and K. Byrne. 1997. Genetic diversity of Asian water buffalo (Bubalus bubalus): microsatellite variation and a comparison with protein-coding loci. Anim. Genet. 28:103-115 https://doi.org/10.1111/j.1365-2052.1997.00085.x
  2. Belkhir, K., P. Borsa, J. Goudet, L. Chikhi and F. Bonhomme. 1998. GENETIX, Windows software TM for population genetics (in French). Genome Laboratory, Populations, Interactions CNRS UMR 5000, University of Montpellier II, Montpellier (France)
  3. Bevilacqua, C., P. Ferranti, G. Garro, C. Veltri, R. Lagonigro, C. Leroux, E. Pietrola, F. Addeo, F. Pilla, L. Chianese and P. Martin. 2002. Interallelic recombination is probably responsible for the occurrence of a new -casein variant found in the goat species. Europ. J. Biochem. 269:1293-1303 https://doi.org/10.1046/j.1432-1033.2002.02777.x
  4. Budowle, B., R. Chakraborty, A. M. Giusti, A. J. Eisenberg and R. C. Allen. 1991. Analysis of the VNTR locus D1S80 by the PCR followed by high-resolution PAGE. Am. J. Human Genet. 48:137-144
  5. Canon, J., M. L. Checa, C. Carleos, J. L. Vega-Pla, M. Vallejo and S. Dunner. 2000. The genetic structure of spanish Celtic horse breeds inferred from microsatellite data. Anim. Genet. 31:39-48 https://doi.org/10.1046/j.1365-2052.2000.00591.x
  6. Chenyambuga, S. W., O. Hanotte, J. Horbo, P. C. Watts, S. J. Kemp, G. C. Kifaro, P. S. Gwakisa, P. H. Petersen and J. E. O. Rege. 2004. Genetic characterization of indigenous goats of Sub-Saharan Africa using microsatellite DNA markers. Asian-Aust. J. Anim. Sci. 17:445-452 https://doi.org/10.5713/ajas.2004.445
  7. Chessel, D., A.-B. Dufour and J. Thioulouse. 2004. The ade4 package-I- One-table methods. R News 4:5-10
  8. Doutressoulle, G. 1947. L'elevage en Afrique Occidentale Francaise. Larousse, Paris
  9. Eding, J. H. and G. Laval. 1999. Measuring genetic uniqueness in livestock, in: (Ed. J. K. Oldenbroek), Genebanks and the conservation of farm animal genetic resources, DLO Inst. Anim. Sci. Health, Leylstad
  10. Epstein, H. 1971. The origin of domestic animals of Africa. Vol II. Africana Publ. Corp. New York
  11. Felsenstein, J. 1993. PHYLIP- Phylogeny Inference package, Version3.5. Department of Genetics, Washington University, Seattle, WA
  12. Grosclaude, F., M. F. Mahe, G. Brignon, L. Di Stasio and R. Jeunet. 1987. A Mendelian polymorphism underlying quantitative variation of goat $\alpha_{s1}$-casein. Genet. Selec. Evol. 19:399-412 https://doi.org/10.1186/1297-9686-19-4-399
  13. Grosclaude, F., G. Ricordeau, P. Martin, F. Remeuf, L. Vassal and J. Bouillon. 1994. From gene to cheese : goat $\alpha_{s1}$ casein polymorphism and its effects and evolutionevolution (in French). INRA Anim. Prod. 7:3-19
  14. Hanotte, O., C. L. Tawah, D. G. Bradley, M. Okomo, Y. Verjee, J. Ochieng and J. E. O. Rege. 2000. Geographic distribution and frequency of a taurine Bos taurus and an indicine Bos indicus Y specific allele amongst sub-Saharan African cattle breeds. Molec. Ecol. 9:387-396 https://doi.org/10.1046/j.1365-294x.2000.00858.x
  15. Hanotte,, O., D. G. Bradley, J. W. Ochieng, Y. Verjee, E. W. Hill and J. E. O. Rege. 2002. African pastoralism :genetic imprints of origins and migrations. Sci. 296:336-339 https://doi.org/10.1126/science.1069878
  16. Ihaka, R. and R. Gentleman. 1996. R: A Language for Data Analysis and Graphics. J. Comput. Graphic. Stat. 5:299-314 https://doi.org/10.2307/1390807
  17. ILRI. 1995. Characterise african cattle genetic resources using molecular genetics (in French). News letter of the International Livestock Reseach Institute (ILRI) July, 1995
  18. Jeanpierre, M. 1987. A rapid method for the purification of DNA from blood. Nucleic Acid Research 15:9611 https://doi.org/10.1093/nar/15.22.9611
  19. Jin, H-G., Z. Yu-min and Z. Guo-li. 2005. Analysis of microsatellite DNA polymorphism in five China native cattle breeds and application to population genetics studies. Asian-Aust. J. Anim. Sci. 18:1696-1700 https://doi.org/10.5713/ajas.2005.1696
  20. Joshi, M. B., P. K. Rout, A. K. Mandal, C. Tyler-Smith, L. Singh and K. Thangaraj. 2004. Phylogeography and Origin of Indian Domestic goats. Molec. Biol. Evol. 21:454-462 https://doi.org/10.1093/molbev/msh038
  21. Kane, M. 1995. Domestic animal breeds of Maurtitania (in French). Anim. Genet. Res. Infor. 15:3-25 https://doi.org/10.1017/S1014233900000390
  22. Kantanen, J., I. Olsaker, L. E. Holm, S. Lien, J. Vilkki, K. Brusgaard, E. Eythorsdottir, B. Dannell and S. Adalsteinsson. 2000. Genetic diversity and population structure of 20 North European cattle breeds. J. Hered. 91:446-457 https://doi.org/10.1093/jhered/91.6.446
  23. Laval, G., M. SanCristobal and C. Chevalet. 2002. Measuring genetic distances between breeds: use of some distances in various short term evolution models. Genet. Selec. Evol. 34:481-507 https://doi.org/10.1186/1297-9686-34-4-481
  24. Li, C., Z. Wang, B. Liu, S. Yang, Z. Zhu, B. Fan, M. Yu, S. Zhao and K. Li. 2004. Evaluation of the genetic relationship among ten Chinese indigenous pig breeds with twenty-six microsatellite markers. Asian-Aust. J. Anim. Sci. 17:441-444 https://doi.org/10.5713/ajas.2004.441
  25. Luikart, G., M. P. Biju-Duval, O. Ertugrul, Y. Zagdsuren, C. Maudet and P. Taberlet. 1999. Power of 22 microsatellite markers in fluorescent multiplexes for parentage testing in goat (Capra hircus). Anim. Genet. 30:431-438 https://doi.org/10.1046/j.1365-2052.1999.00545.x
  26. Luikart, G., L. Gielly, L. Excoffier, J-D. Vigne, J. Bouvet and P. Taberlet. 2001. Multiple maternal origins and weak phylogeographic structure in domestic goats. Proceedings of the National Academy of Sciences of the United States of America 98:5927-5932
  27. MacHugh, D. E., M. D. Shriver, R. T. Loftus, P. Cunningham and D. G. Bradley. 1997. Microsatellite DNA variation and the Evolution, Domestication and Phylogeography of Taurine and Zebu cattle (Bos taurus and Bos indicus). Genet. 146:1071-1086
  28. Mahe, M. F. and F. Grosclaude. 1993. Polymorphism of $\alpha$-casein in the Creole goat of Guadeloupe: evidence for a null allele. Genet. Selec. Evol. 25:403-408 https://doi.org/10.1186/1297-9686-25-4-403
  29. Mantel, N. 1967. The detection of disease clustering and generalized regression approach. Cancer Res. 27:209-220
  30. Missohou, A. and E. H. Adakal. 2004. Current and perspective situation of a sustainable management of the bovine genetic resources of West Africa (in French). Proceedings of the 2004 Ouagadougou sustainable development conference Ouagadougou, Burkina -Faso pp. 429-435
  31. Moazami-Goudarzi, K. and D. Laloe. 2002. Is a multivariate consensus representation of genetic relationships among populations always meaningful? Genet. 162:473-484
  32. Ramuno, L., G. Cosenza, A. Rnafo, R. Illario, D. Gallo, D. D. Berardino and P. Masina. 2004. The goat $\alpha$S1-casein gene: gene structure and promoter analysis. Gene. 334:105-111 https://doi.org/10.1016/j.gene.2004.03.006
  33. Raymond, M. and F. Rousset. 1995. GENEPOP Version 1.2. A population genetics software for exact tests and ecumenicism. J. Hered. 86:248-249 https://doi.org/10.1093/oxfordjournals.jhered.a111573
  34. Rando, A., L. Ramuno and P. Masina. 2000. Mutations in casein genes. Zootecnica e Nutrizione Animale 26:105-114
  35. Reynolds, J., B. S. Weir and C. C. Cockerham. 1983. Estimation of the coancestry coefficient: basis for a short-term genetic distance. Genet. 105:767-779
  36. SAS Institute. 2000 SAS/STAT, User's guide, version 8. SAS Institute, Carry, NC
  37. Saitbekova, N., C. Gaillard, G. Obexer-Ruff and G. Dolf. 1999. Genetic diversity in Swiss goat breeds based on microsatellite analysis. Anim. Genet. 30:36-41 https://doi.org/10.1046/j.1365-2052.1999.00429.x
  38. Selvi, P. K., J. M. Panandam, K. Yussoff and S. G. Tan. 2004. Molecular characterisation of the Mafriwal dairy cattle of Malaysia using microsatellite markers. Asian-Aust. J. Anim. Sci. 17:1366-1368 https://doi.org/10.5713/ajas.2004.1366
  39. Sun, H. Z. J. Chang, Z. P. Ren, R. Q. Yang, S. X. Geng, L. Lu, Du and K. Tsunoda. 2004. Genetic differentiation between sheep and goats based on mecrosatillite DNA. Asian-Aust. J. Anim. Sci. 17:583-587 https://doi.org/10.5713/ajas.2004.583
  40. Takezaki, N. and M. Nei. 1996. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genet. 144:389-399
  41. Wilson, R. T. 1992. Petits ruminants: production et ressources genetiques en Afrique tropicale. Etude FAO Production et Sante Animales $N^{\circ}88$, Food and Agriculture Organisation of the United Nations (FAO), Rome, Italy
  42. Wang, X., H. H. Cao and S. M. Geng. 2004. Genetic diversity of 10 indigenous pig breeds in China by using microsatellite markers. Asian-Aust. J. Anim. Sci. 17:1219-1222 https://doi.org/10.5713/ajas.2004.1219
  43. Yang, Z. P., H. Chang, W. Sun, R. Q. Gen, Y. J. Mao and K. Tsunoda. 2004. A comparison of two kinds of markers applied in analysis of genetic diversity. Asian-Aust. J. Anim. Sci. 17:892-896 https://doi.org/10.5713/ajas.2004.892
  44. Yang, L., S. H. Zhao, K. Li, Z. Z. Peng and G. W. Montgomery. 1999. Determination of genetic relationships among five indigenous Chinese goat breeds with six microsatellite markers. Anim. Genet. 30:452-455 https://doi.org/10.1046/j.1365-2052.1999.00548.x
  45. Yoon, D-H., H-S. Kong, J-D. Oh, J-H. Lee, B-W. Cho, J-D. Kim, K-J. Jeon, C-Y. Jo, G-J. Jeon and H-K. Lee. 2005. Establishment of an individual identification system based on microsatellite polymorphism in Korean cattle (Hanwoo). Asian-Aust. J. Anim. Sci. 18:762-766 https://doi.org/10.5713/ajas.2005.762
  46. Zeder, M. A. and B. Hesse. 2000. The initial domestication of goats (Capra hircus) in the Zagros mountains 10,000 years ago. Sci. 287:2254-2257 https://doi.org/10.1126/science.287.5461.2254

Cited by

  1. Genetic polymorphism of α S1 casein in Guéra and Sahel goat vol.54, pp.2078-6344, 2014, https://doi.org/10.1017/S2078633613000490
  2. Evaluation of insulin-like growth factor-I gene polymorphism in Egyptian small ruminant breeds vol.15, pp.48, 2016, https://doi.org/10.5897/AJB2016.15727
  3. Genetic Structure of Mongolian Goat Populations Using Microsatellite Loci Analysis vol.21, pp.7, 2006, https://doi.org/10.5713/ajas.2008.70285
  4. A New Single Nucleotide Polymorphism in the IGF-I Gene and Its Association with Growth Traits in the Nanjiang Huang Goat vol.21, pp.8, 2006, https://doi.org/10.5713/ajas.2008.70673
  5. Genetic diversity and differentiation in nine West African local goat breeds assessed via microsatellite polymorphism vol.99, pp.1, 2006, https://doi.org/10.1016/j.smallrumres.2011.04.005
  6. MicroRNA-26a/b and their host genes synergistically regulate triacylglycerol synthesis by targeting theINSIG1gene vol.13, pp.5, 2006, https://doi.org/10.1080/15476286.2016.1164365
  7. Influence of seasonal changes on physiological variables, haematology and serum thyroid hormones profile in male Red Sokoto and Sahel goats vol.45, pp.1, 2017, https://doi.org/10.1080/09712119.2016.1220384
  8. Genetic morphometry in Nigerian and South African Kalahari Red goat breeds vol.51, pp.2, 2006, https://doi.org/10.2478/ats-2018-0006
  9. Polymorphism of growth hormone gene in three goat breeds in Egypt vol.42, pp.1, 2006, https://doi.org/10.1186/s42269-018-0035-0
  10. Livestock Genomics for Developing Countries – African Examples in Practice vol.10, pp.None, 2006, https://doi.org/10.3389/fgene.2019.00297
  11. Timing and Extent of Inbreeding in African Goats vol.10, pp.None, 2006, https://doi.org/10.3389/fgene.2019.00537
  12. Genetic Distance and Gene Flow in Five Populations of Nigerian Local Breeds of Goat Using Random Amplified Polymorphic DNA Markers vol.15, pp.1, 2006, https://doi.org/10.3923/tasr.2020.36.42