Asian-Australasian Journal of Animal Sciences

Asian Australasian Association of Animal Production Societies (아세아태평양축산학회)
권호 표지
DOI QR코드

DOI QR Code

Analysis of Microsatellite Markers on Bovine Chromosomes 1 and 14 for Potential Allelic Association with Carcass Traits in Hanwoo (Korean Cattle)

  • Choi, I.S. (Genomic Informatics Center, Hankyong National University) ;
  • Kong, H.S. (Animal Products Grading Service) ;
  • Oh, J.D. (Genomic Informatics Center, Hankyong National University) ;
  • Yoon, D.H. (National Livestock Research Inst.) ;
  • Cho, B.W. (Miryang National University) ;
  • Choi, Y.H. (National Livestock Research Inst.) ;
  • Kim, K.S. (Chung Buk National University) ;
  • Choi, K.D. (Genomic Informatics Center, Hankyong National University) ;
  • Lee, H.K. (Genomic Informatics Center, Hankyong National University) ;
  • Jeon, G.J. (Genomic Informatics Center, Hankyong National University)
  • Received : 2005.07.17
  • Accepted : 2006.03.10
  • Published : 2006.07.01
Download PDF
⟨ Previous Next ⟩

Abstract

This study was conducted to investigate potential effects of previously identified QTL regions on carcass traits in Hanwoo. The data analyzed in this study was collected from 326 steers of 67 proven sire. Thirteen micorsatellite markers spanning QTL regions on bovine chromosomes 1 and 14 were genotyped in 326 steers. The following breeding values were analyzed for QTL effects. Cold carcass weight breeding value (CCWBV), longissimus muscle area breeding value (LMABV), marbling score breeding value (MSBV) and backfat thickness breeding value (BFTBV). Chi-square tests were performed to compare frequencies of individual allele between high and low breeding value groups. Significant differences of allele frequencies in BMS711, MCM130, BMS4049, and BMS2263 were found. And also, in RM180, BL1029, BM4305, and BMS2055 there were significant differencies of allele frequencies. These results showed a potential application for investigation of putative QTL locations.

Keywords

References

  1. Boldman, K. G., L. A. Kriese, L. D. Van Vleck, C. P. Van Tassell, and S. D. Kachman. 1995. A manual for use of MTDFREML. A set of programs to obtain estimates of variances and covariances ARS, USDA, Washington, DC
  2. Casas, E., S. D. Shackelford, J. W. Keele, M. Koohmaraie, T. P. Smith and R. T. Stone. 2003. Detection of quantitative trait loci for growth and carcass composition in cattle. J. Anim. Sci. 81:2976-2983
  3. Dekkers, J. C. M. 2004. Commercial application of marker and gene assisted selection in livestock: Strategies and lessons. J. Anim. Sci. 82:E. Suppl.):E313-E328
  4. Kim, J. J., F. Farnir, J. Savell and J. F. Taylor. 2003. Detection of quantitative trait loci for growth and beef carcass fatness traits in a cross between Bos Taurus (Angus) and Bos indicus (Brahman) cattle. J. Anim. Sci. 81:1933-1942
  5. Kim, J. W., J. M. Hong, Y. S. Lee, S. H. Chae, C. B. Choi, I. H. Choi and J. S. Yed. 2004. Identification of new microsatelite DNAs in the chromosomal DNA of the Korean cattle (Hanwoo). Asian-Aust. J. Anim. Sci. 17:1329-1333 https://doi.org/10.5713/ajas.2004.1329
  6. Kneeland, J., C. Li, J. Basarab, W. M. Snelling, B. Benkel, B. Murdoch, C. Hansen and S. S. Moore. 2004. Identification and fine mapping of quantitative trait loci for growth traits on bovine chromosome 2, 6, 14, 19, 21 and 23 within one commercial line of Bos Taurus. J. Anim. Sci. 82:3405-3414
  7. Li, C., J. Basarab, W. M. Snelling, B. Benkel, B. Murdoch and S. S. Moore. 2002. The identification of common haplotypes on bovine chromosome 5 within commercial lines of Bos Taurus and their associations with growth traits. J. Anim. Sci. 80:1187-1194
  8. MacNeil, M. D. and M. D. Grosz. 2002. Genome-wide scans for QTL affecting carcass traits in Hereford$\times$composite double backcross populations. J. Anim. Sci. 80:2316-2324
  9. Stone, R. T., J. W. Keele, S. D. Shackelford, S. M. Kappes and M. Koohmaraie. 1999. A primary screen of the bovine genome for quantitative trait loci affecting carcass and growth traits. J. Anim. Sci. 77:1379-1384 https://doi.org/10.2527/1999.7761379x
  10. Xu, D. Q., Y. Z. Xiong, M. Liu, J. Lan, X. F. Ling, C. Y. Deng and S. W. Jiang. 2005. Association analyses with carcass traits in the porcine KIAA1717 and HUMMLC2B genes. Asian-Aust. J. Anim. Sci. 18:1519-1523 https://doi.org/10.5713/ajas.2005.1519
  11. Yeo, J. S., J. W. Kim, H. S. Shin and J. Y. Lee. 2004. Bootstrap analysis and major DNA markers of BM4311 microsatellite locus in Hanwoo chromosome 6. Asian-Asut. J. Anim. Sci. 17:1033-1038 https://doi.org/10.5713/ajas.2004.1033

Cited by

  1. Additive and epistatic genome-wide association for growth and ultrasound scan measures of carcass-related traits in Brahman cattle vol.132, pp.2, 2015, https://doi.org/10.1111/jbg.12147
  2. A whole genome association study to detect additive and dominant single nucleotide polymorphisms for growth and carcass traits in Korean native cattle, Hanwoo vol.30, pp.1, 2017, https://doi.org/10.5713/ajas.16.0170
  3. A genome-wide association study of meat and carcass traits in Australian cattle1 vol.89, pp.8, 2011, https://doi.org/10.2527/jas.2010-3138
  4. Chromosomal Localization of Korean Cattle (Hanwoo) BAC Clones via BAC end Sequence Analysis vol.20, pp.3, 2006, https://doi.org/10.5713/ajas.2007.316