DOI QR코드

DOI QR Code

Phylogenetic Study of Genera Staurastrum and Staurodesmus (Zygnemophyceae, Streptophyta) Inferred from atpB Sequences

atpB 유전자 염기서열을 이용한 Staurastrum 속과 Staurodesmus 속 (Zygnemophyceae, Streptophyta)의 계통학적 연구

  • Published : 2005.12.01

Abstract

We analyzed chloroplast ATP synthetase beta subunit(atpB) sequences from 32 strains of the zygnemophycean green algae, Staurastrum, Staurodesmus, and a single species of Xanthidium. A total of 42 atpB sequences including previously published ones was aligned for phylogenetic analyses. The phylogenies were validated with bootstrap analysis and Kishino-Hasegawa test. Taxa of Staurastrum excluding S. muticum indicate that they can be characterized by taxa having the ornamented cell wall or the process of cells. However, the genus Staurodesmus was grouped with taxa having the smooth cell wall and the absence of process or arms. The results suggest that the genus Staurodesmus could be extended to include Staurastrum muticum, Desmidium, Onychonema and Xanthidium. Further taxon sampling of Staurodesmus and putative relatives is necessary for a solid classification of the genus.

Keywords

References

  1. 이인규, 최청일, 유종수, 이상돈. 1996. 한국 생물종 목록-국내 생물종 문헌 연구. 사단법인자연보호중앙협의회. pp. 415-419
  2. 정준. 1993. 한국 담수조류도감. 아카데미 서적, 서울.496 pp
  3. Bicudo C.E.M. 1984. Proposal for the conservation of the generic name Arthrodesmus Archer. Taxon 33: 107-108 https://doi.org/10.2307/1222047
  4. Bold H.C. and Wynne N.J. 1978. Introduction to the Algae. Structure and reproduction. Prentice Hall, New Jersey. 572 pp
  5. Christensen T. 1987. Report of the committee for algae. Taxon 36: 66-69 https://doi.org/10.2307/1221357
  6. Chung Y.H., Lee O.M. and Noh K.H. 1985. Annual (1984-'85) dynamics of phytoplaktons in Kum river estuary. Bull. of KACN 7: 17-25
  7. Chung Y.H., Lee O.M. and Noh K.H. 1986. Flora and dynamics of phytoplankton in downstream of Yongsan river. Bull. of KACN 8: 15-23
  8. Croasdale H.T., Flint E.A. and Racine M.M. 1994. Flora of New Zealand. Freshwater algae, chlorophyta, dsemids III. Caxton Press, Christchurch. 132 pp. 27 pIs
  9. Eherenberg C.G. 1838. Die Infusionsthierchen als vollkommene Organismen. 548 pp. 64 pIs
  10. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791 https://doi.org/10.2307/2408678
  11. Gerrath J.F. 1993. The biology desmids: a decade of progress. In: Round F.E. and Chapman D.J. (e d s), Progress in Phycological Research, Vol. 9. Biopress Ltd. Bristol. pp. 79-192
  12. Gontcharov A., Marin B. and Melkonian M. 2003. Molecular phylogeny of conjugating green algae (Zygnemophyceae, Streptophyta) inferred from SSU rDNA sequence comparisons. J. Mol. Evol. 56: 89-104 https://doi.org/10.1007/s00239-002-2383-4
  13. Hirano M. 1955-1959. Flora Desmidiarum Japonicarum I-VI. Contrib. BioI. Lab., Kyoto Univ. pp. 1-386
  14. Hirose H.M., Akiyama T., Imahori K., Kasaki H., Kumano S., Kobayasi H., Takahashi E., Tsumura T., Hirano M. and Yamagishi T. 1977. lllusrations of the Japanese freshwater algae. Uchidarokakuho Publishing Co., Ltd., Tokyo. 933 pp
  15. Karol K.G. 2002. Unpublished. In: GenBank http://www.ncbi.nlm.nih.gov/entrez/
  16. Karol K.G., McCourt R.M., Cimino M.T. and Delwiche C.F. 2001. The closest living relatives of land plants. Science 294: 2351-2353 https://doi.org/10.1126/science.1065156
  17. Kies L. 1967. Uber Zellteilung und Zygotenbildung bei Roya obtllsa(Breb.) West et West. Mitt. Staatsinst. Allg. Bot. 12: 35-42
  18. Kim H.S. 1996. Desmids (Staurastrum and Staurodesmus) from Kyongsangnam-Do, Korea. Nova Hedwigia 62: 521-541
  19. Kim H.S., Choi J.S., Chung J. and Kim D.H. 1995. A study on the phytoplankton community in the Jinyang lake. Kor. J. Limnol. 28: 345-357
  20. Kim J.H., Lee S.J. and Oh H.M. 2000. Dynamics of epilithic algal community in the Geum river, Korea. Algae 15: 287-297
  21. Kimura M. 1980. A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120 https://doi.org/10.1007/BF01731581
  22. Kishino H. and Hasegawa M. 1989. Evolution of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data and the branching order of the Hominoidea. J Mol Evol. 29: 170-179 https://doi.org/10.1007/BF02100115
  23. Lee K. and Yoon S.K. 2003. Ecological studies on Togyo reservoir in Chulwon, Korea VI. The list of phytoplankton and periphyton. Algae 18: 263-272 https://doi.org/10.4490/ALGAE.2003.18.4.263
  24. Lee O.M. 1994. The annual dynamics of standing crops and distribution of phytoplankton in [uam lake in 1992. Kor. J. Limnol. 27: 327-337
  25. Lee O.M. 1995. The distribution and standing crop of phytoplankton at freshwater area in Youngkwang-gun, Cheonnam. Proc. Basic Sci. Res. Inst. Kyonggi Univ. 8: 123-139
  26. Lee O.M. and Song H.Y. 1995. The annual dynamics of standing crops and distribution of phytoplankton of Juam lake in 1993. Kor. J. Limnol. 28: 427-436
  27. McCourt R.M., Karol K.G., Bell J., Helm-Bychowski K.M., Grajewska A., Wojciechowski M.F. and Hoshaw R.W. 2000. Phylogeny of the conjugating green algae (Zygnemophyceae) based on rbcLsequences. J. Phycol. 36: 747-758 https://doi.org/10.1046/j.1529-8817.2000.99106.x
  28. Meyen F.J.F. 1829. Beobachtungen ber einige niedere Algenformen. Nov. Act. Acad. Caesar Leap. Carol. Nat. Cur. 14: 768-778. pls. 43
  29. Moon B.R. and Lee O.M. 2004a. A taxonomic study of genus Staurastrum(Chlorophyta) including Korean unrecorded species. Kor. J. Limnol. 37: 282-296
  30. Moon B.R. and Lee O.M. 2004b. A phylogenetic study of Staurastrum complex (Chlorophyta) inferred from coxIII sequence analysis. Algae 19: 153-160 https://doi.org/10.4490/ALGAE.2004.19.3.153
  31. Nam M.R. and Lee O.M. 2001. A comparative study of morphological characters and sequences of rbcL gene in Staurastrum of desmid. Algae 16: 363-367
  32. Park J.W., Kim Y.J. and Chung J. 1995. Structure of phytoplankton community in the Kumho river. Kor. J. Limnol. 28: 49-60
  33. Posada D. and Crandall K. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics 14: 817-818 https://doi.org/10.1093/bioinformatics/14.9.817
  34. Prescott G.W., Bicudo C.E.M. and Vinyard W.C. 1982. A synopsis of north American desmids. Part II. Section 4. The University of Nebraska Press, Lincoln. pp. 88-345
  35. Ralfs J. 1848. The British Desmideae. Wheldon & Wesley, Ltd., New York. xxii+226 pp. 35 pls
  36. Sambrook J., Fritsch E.F. and Maniatis T. 1989. Molecular cloning 1. Cold Spring Harbor Laboratory Press, New York. pp. 1.53-1.105
  37. Swofford D.L. 2002. PAUP$\ast$: Phylogentic analysis using parsimony ($\ast$ and other methods). V.4.0b8. Sinauer Associates, Sunderland, Massachusetts
  38. Teiling E. 1948. Staurodesmus, genus novum. Containing monospious desmids. Bot. Not. 1948: 49-83, 72 figs
  39. Teiling E. 1967. The desmid genus Staurodesmus. A taxonomic study. Ark. f . Bot., II 6: 467-629, 31 pls
  40. Thompson J.D., Plewniak F. and Poch O. 1999. A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res. 27: 2682-2690 https://doi.org/10.1093/nar/27.13.2682
  41. West W. and West G.5. 1912. A monograph of the British Desmidiaceae. Vol. IV. Ray Soc., London. P. 184, PI. 128, Figs 1, 2
  42. West W., West G.S. and Carter N. 1923. A monograph of the British Desmidiaceae. Vol. V. Ray Soc., London. 300 pp. 38 pls

Cited by

  1. Phylogeny and classification of Zygnematophyceae (Streptophyta): current state of affairs. 2008, https://doi.org/10.5507/fot.2008.004