References
- Amberg, S. M. and Meints, R. H. 1991. Nucleotide sequence of the genes for ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit and ribosomal protein S14 from a Chlorella-like green alga. J. Phycol. 27:753-758 https://doi.org/10.1111/j.0022-3646.1991.00753.x
- Bowden, R. J., Simas, J. P., Davis, A. J. and Efstathiou, S. 1997. Murine gammaherpesvirus 68 encodes tRNA-like sequences which are expressed during latency. J. Gen. Virol. 78:1675-1687 https://doi.org/10.1099/0022-1317-78-7-1675
- Carstens, C.-P., Bonnardel, J., Allen, R. and Anna Waesche, A. 2002. BL21-CodonPlus cells correct expression problems caused by codon bias. Strategies 14:50-51
- Chen, G. T. and Inouye, M. 1994. Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli. Genes Dev. 8:2641-52 https://doi.org/10.1101/gad.8.21.2641
- Cowe, E. and Sharp, P. M. 1991. Molecular evolution of bacteriophages: discrete patterns of codon usage in T4 genes are related to the time of gene expression. J. Mol. Evol. 33:13-22 https://doi.org/10.1007/BF02100191
- Calendar, R. 1988. The bacteriophages. In: The Viruses, ed. by H. Fraenkel-Conrat and R. R. Wagner, Plenum Press, New York. 56pp
- Cho, H. H., Park, H. H., Kim, J. O. and Choi, T. J. 2002. Isolation and characterization of chlorella viruses from freshwater sources in Korea. Mol. Cells. 14:168-176
- Deana, A., Ehrlich, R. and Reiss, C. 1998. Silent mutations in the Escherichia coli ompA leader peptide region strongly affect transcription and translation in vivo. Nucl. Acids Res. 26:4778-82 https://doi.org/10.1093/nar/26.20.4778
- Desai, S. M., Vaughan, J. and Weiss, S. B. 1986. Identification and location of nine T5 bacteriophage tRNA genes by DNA sequence analysis. Nucl. Acids Res. 14:4197-4205 https://doi.org/10.1093/nar/14.10.4197
- Ford, M. E., Sarkis, G. J., Belanger, A. E., Hendrix, R. W. and Hatfull, G. F. 1998. Genome structure of mycobacteriophage D29: implication for phage evolution. J. Mol. Biol. 279:143-164 https://doi.org/10.1006/jmbi.1997.1610
- Fraser, C. M., Gocayne, J. D., White, O., Adams, M. D., Clayton, R. A., Fleischmann, R. D., Bult, C. J., Kerlavage, A. R., Sutton, G., Kelly, J. M., Fritchman, J. L., Weidman, J. F., Small, K. V., Sandusky, M., Fuhrmann, J., Nguyen, D., Utterback, J. F., Saudek, D. M., Phillips, C. A., Merrick, J. M., Tomb, J. F., Dougherty, B. A., Bott, K. F., Bu, P. C., Lucier, T. S., Peterson, S. N., Smith, H. O., Hutchison, C. A., III. and Venter, J. C. 1995. The minimal gene complement of Mycoplasma genitalium. Science 270:397-403 https://doi.org/10.1126/science.270.5235.397
- Hershko, A and Ciechanover, A. 1998. The ubiquitin system. Annu. Rev. Biochem. 67:425-479 https://doi.org/10.1146/annurev.biochem.67.1.425
- Hushpulian, D. M., Savitski, P. A., Rojkova, A. M., Chubar, T. A., Fechina, V. A., Sakharov, I. Y., Lagrimini, L. M., Tishkov, V. I. and Gazaryan, I. G. 2003. Expression and refolding of tobacco anionic peroxidase from E. coli inclusion bodies. Biochemistry(Mosc) 68:1189-1194 https://doi.org/10.1023/B:BIRY.0000009132.45842.93
- Goldberg, A. L. 1992. The mechanism and functions of ATP-dependent proteases in bacterial and animal cells. Eur. J. Biochem. 203:9-23 https://doi.org/10.1111/j.1432-1033.1992.tb19822.x
- Graves, M. V., Burbank, D. E., Roth, R., Heuser, J., DeAngelis, P. L. and Van Etten, J. L. 1999. Hyaluronan synthesis in virus PBCV-1 infected chlorella-like green algea. Virology 257:15-23 https://doi.org/10.1006/viro.1999.9628
- Jiang, X., Nakano, H., Kigawa, T., Yabuki, T., Yokoyama, S., Clark, D. S. and Yamane, T. 2001. Dosage effect of minor arginyl- and isoleucyl-tRNAs on protein synthesis in an Escherichia coli in vitro coupled transcription / translation system. J. Biosci. Bioeng. 91:53-57 https://doi.org/10.1263/jbb.91.53
- Kanjo, N. and Inokushi, H. 1999. Genes for tRNA-Arg located in the upstream region of the Shiga toxin II operon in enteromorrhagic Escherichia coli O157:H7. DNA Res. 6:71-73 https://doi.org/10.1093/dnares/6.1.71
- Kleber-Janke, T. and Becker, W. M. 2000. Use of modified BL21(DE3) Escherichia coli cells for high-level expression of recombinant peanut allergens affected by poor codon usage. Prot. Exp. Purification 19:419-424 https://doi.org/10.1006/prep.2000.1265
- Kumar, S., Birah, A., Chaudhary, B., Burma, P. K., Gupta, G. P. and Pental, D. 2005. Plant codon optimized cry genes of Bacillus thuringiensis can be expressed as soluble proteins in Escherichia coli BL21 Codon Plus strain as NusA-Cry protein fusions. J. Invertebr. Pathol. 88:83-86 https://doi.org/10.1016/j.jip.2004.09.002
- Kunisawa, T. 2000. Functional role of mycobacteriophage transfer RNAs. J. Theor. Biol. 205:167-170 https://doi.org/10.1006/jtbi.2000.2057
- Kunisawa, T. 2002. Functional role of bacteriophage transfer RNAs: codon usage analysis of genomic sequences stored in the GENBANK/EMBL/DDBJ tadabases. Data Science J. 1:216-228 https://doi.org/10.2481/dsj.1.216
- Kutish, G., Li, Y., Lu, Z., Furuta, M., Rock, D. L. and Van Etten, J. L. 1996. Analysis of 76kb of the Chlorella virus PBCV-1 330kb genome: Map position 182 to 258. Virology 223:303-317 https://doi.org/10.1006/viro.1996.0482
- Lavrukhin, O. V., Fortune, F. M., Wood, T. G., Burbank, D. E., Van Etten, J. L., Osheroff, N. and Lloyd, R. S. 2000. Topoisomerase II from chlorella virus PBCV-1. Characterization of the smallest known type II topoisomerase. J. Biol. Chem. 275:6915-6921 https://doi.org/10.1074/jbc.275.10.6915
- Li, Y., Lu, Z., Burbank, D. E., Kutish, G. F. and Van Etten, J. L. 1995. Analysis of 43kb of the Chlorella virus PBCV-1 330kb genome: Map position 45 to 88. Virology 212:134-150 https://doi.org/10.1006/viro.1995.1462
- Li, Y., Lu, Z., Sun, L., Ropp, S., Kutish, G. F., Rock, D. L. and Van Etten, J. L. 1997. Analysis of 74 kb of DNA located at the right end of the 330-kb Chlorella virus PBCV-1 genome. Virology 237:360-377 https://doi.org/10.1006/viro.1997.8805
- Lu, Z., Li, Y., Zhang, Y., Kutish, G. F., Rock, D. L. and Van Etten, J. L. 1995. Analysis of 45kb of DNA located at the left end of the chlorella virus PBCV-1 genome. Virology 206:339-352 https://doi.org/10.1016/S0042-6822(95)80049-2
- Lu, Z., Li, Y., Que, Q., Kutish, G. F., Rock, D. L. and Van Etten, J. L. 1996. Analysis of 94 kb of the Chlorella virus PBCV-1 330 kb genome: Map position 88 to 182. Virology 216:102-123 https://doi.org/10.1006/viro.1996.0038
- Nishida, K., Suzuki, S., Kimura, Y., Nomura, N., Fujie, M. and Yamada, T. 1998. Group I introns found in chlorella viruses: Biological implications. Virology 242:319-326 https://doi.org/10.1006/viro.1998.9030
- Nishida, K., Kawasaki, T., Fujie, M., Usami, S. and Yamada, T. 1999. Aminoacylation of tRNAs encoded by Chlorella virus CVK2. Virology 263:220-229 https://doi.org/10.1006/viro.1999.9949
- Plunkett, III, G., Rose, D. J., Durfee, T. J. and Blattner, F. R. 1999. Sequence of Shiga toxin 2 phage 933W from Escherichia coli O157:H7:Shiga toxin as a phage late-gene product. J. Bacteriol. 181:1767-1778
- Schuster, A. M., Graves, M., Korth, K., Ziegelbein, M., Brumbaugh, J., Grone, D. and Meints, R. H. 1990. Transcription and sequence studies of a 4.3kbp fragment from a dsDNA eukaryotic algal virus. Virology 176:515-523 https://doi.org/10.1016/0042-6822(90)90021-I
-
Smith, M. C. M., Burns, R. N., Wilson, S. E. and Gregory, M. A. 1999. The complete genome sequence of the Streptomyces temperate phage
${\varphi}$ C31: evolutionary relationships to other viruses. Nucl. Acids Res. 27:2145-2155 https://doi.org/10.1093/nar/27.10.2145 - Songsri, P., Hiramatsu, S., Fujie, M. and Yamada, T. 1997. Proteolytic processing of Chlorella virus CVK2 capsid proteins. Virology 227:252-254 https://doi.org/10.1006/viro.1996.8298
- Sun, L., Adams, B., Gumon, J. R., Ye, Y. and Van Etten, J. L. 1999. Characterization of two chitinase genes and one chitosanase gene encoded by chlorella virus PBCV-1. Virology 263:376-387 https://doi.org/10.1006/viro.1999.9958
- Van Etten, J. L., Meints, R. H., Burbank, D. E., Kuczmarski, D., Cuppels, D. A. and Lane, L. C. 1981. Isolation and characterization of a virus from the intracellular green alga symbiotic with Hydra viridis. Virology 113:704-711 https://doi.org/10.1016/0042-6822(81)90199-9
- Van Etten, J. L., Burbank, D. E., Kuczmarski, D. and Meints, R. H. 1983. Virus infection of culturable Chlorella-like algea and development of a plaque assay. Science 219:994-996 https://doi.org/10.1126/science.219.4587.994
- Van Etten, J. L., Lane, L. C., and Meints, R. H. 1991. Viruses and viruslike particles of eukaryotic algae. Microbiol. Rev. 55:586-620
- Van Etten, J. L. 2003. Unusual life style of giant chlorella viruses. Annu. Rev. Gen. 37:153-195 https://doi.org/10.1146/annurev.genet.37.110801.143915
- Wilson, J. 1972. Ph.D. thesis, California Institute of Technology, Division of Biology, Pasadena, Calif
- Xia, Y. and Van Etten, J. L. 1986. DNA methyltransferase induced by PBCV-1 virus infection of a Chlorella-like green algea. Mol. Cell. Biol. 6:1440-1445 https://doi.org/10.1128/MCB.6.5.1440
- Yamada, T., Higashiyama, T. and Fukuda, T. 1991. Screening of natural waters for viruses infect Chlorella cells. Appl. Environ. Microbiol. 57:3433-3437
- Yamada, T., Fukuda, T., Tamura, K., Furukawa, S. and Songsri, P. 1993. Expression of the gene encoding a translational elongation factor 3 homolog of chlorella virus CVK2. Virology 197:742-750 https://doi.org/10.1006/viro.1993.1650
- Yamada, T., Hiramatsu, S., Songsri, P. and Fujie, M. 1997. Alternative expression of a chitosanase gene produces two different proteins in cells infected with Chlorella virus CVK2. Virology 230:361-368 https://doi.org/10.1006/viro.1997.8486
- Zhang, Y., Burbank, D. E. and Van Etten, J. L. 1998. Chlorella viruses isolated in China. Appl. Environ. Microbiol. 54:2170-2173
Cited by
- Coevolution mechanisms that adapt viruses to genetic code variations implemented in their hosts vol.95, pp.1, 2016, https://doi.org/10.1007/s12041-016-0612-7