Communications for Statistical Applications and Methods

The Korean Statistical Society (한국통계학회)
권호 표지
DOI QR코드

DOI QR Code

Major DNA Marker Mining of Hanwoo Chromosome 6 by Bootstrap Method

  • Published : 2004.12.01
Download PDF
⟨ Previous Next ⟩

Abstract

Permutation test has been applied for the QTL(quantitative trait loci) analysis and we selected a major locus. K -means clustering analysis, for the major DNA Marker mining of ILSTS035 microsatellite loci in Hanwoo chromosome 6, has been described. Finally, bootstrap testing method has been adapted to calculate confidence intervals and for finding major DNA Markers.

Keywords

References

  1. Bishop, M. D., S. M. Kappes, J. W. Keele, R. T. Stone, S. L. F. Sunden, G. A. Hawkins, S. S. Toddo, R Fries, M. D. Grosz, J. Yoo and C. W. Beattier, 1994. A genetic linkage map for cattle. Genetics 136:619-639
  2. Casas, E., S. D. Shackelford, J W. Keele, R T. Stone, S. M. Kappes and M. Koohmaraie, 1999a. Evidence of quantitative trait loci affecting growth and carcass composition traits in cattle segregating the muscle hypertrophy locus. Joumal of Animal Science 77 Supplement(l) :126-127
  3. Casas, E., J. W. Keele, S. M. Kappes and R. T. Stone, 1999b. A quantitative trait locus for birth and yearling weight segregates on chromosome 6 in Bos Taurus cattle. Plant & Animal Genome VII Coriference, San Diego, CA:P150
  4. Chotai, J,(1984) On the lod score method in linkage analysis. Ann Hum Genet 48:359-378 https://doi.org/10.1111/j.1469-1809.1984.tb00849.x
  5. G.A. Churchill and RW. Doerge, 1994. Empirical Threshold Values for Quantitative Trait Mapping, Genetics 138:963-971.
  6. Georges, M., D. Nielsen, M. Mackinnon, A. Mishra, R Okimoto, A. T. Pasquino, L. S. Sargeant, A. Sorenson, M. R Steele, X. Zhao, J. E. Womack and I. Hoeschele, 1995 Mapping quantitative trait loci controlling milk production in dairy cattle by exploting progeny testing. Genetics 139:907-920
  7. Hirano, T., N. Kobayashi, T. Nakamaru, K Hara and Y. Sugimoto, 1998. Linkage analysis of meat quality in Wagyu. 26th International Conference on Animal Genetics, Auckland, New Zealand:E019
  8. Kim, J. W., T. K jang, Y. A. Park and J. S. Yeo. 2000. Linkage mapping of chromosome 6 in the Korean Cattle(Hanwoo). Asian-Aust. Anim Sci.13(SuppL):235
  9. Lander, E. and Bostein, D. 1989. Mapping mendelian factors underlying quantative traits using RFLP linkage maps. Genetics 121; 185-199
  10. Ott, Jurg. 1999. Analysis of human genetic linkage, 3rd ed. The johns Hopkins university press
  11. Mannen, H., S. Tsuji, F. Mukai, N. Goto and S. Ohtagaki, 1993. Genetic Similarity using DNA fingerprinting in cattle to determine relationship coefficient. J. Hered. 84:166-169 https://doi.org/10.1093/oxfordjournals.jhered.a111310
  12. Rassman, K, C. Scholotterer and D. Tautz, 1991. Isolation of simple-sequence loci for use in polymerase chain reaction base DNA fingerprinting. Electrophoresis 12:113-118 https://doi.org/10.1002/elps.1150120205
  13. Stone, R. T., E. Casas, S. M. Cappes and]. W. Keele, 1999. Status of mapping bovine QTL at the U.S. meat animal research center. Plant-Animal Genome VII Conference, San Diego, CA:W34
  14. Taylor, J. F., S. K. Davis, J. O. Sanders, J. W. Turner, R. K Miller and S. B. Smith, 1998. Identification of QTLs for growth and carcass quality in a cross between Bos indicus and Bos taurus. Plant-Animal Genome VII Conference, San Diego, CA:W19
  15. Roslin Institute, 2000. Bovine gene map. URL=http.//ri.bbsrc.ac.uk/
  16. Phillip G. (1994) 'Permutation Test' Springer-Verlag
  17. Efron B., Tibshirani R. (1993) 'An Introdction to bootstrap' CHAMPMAN & HALL
  18. Peter M. Visscher, Robin Thompson and Chris S. Haley ,1996. Confidence Intervals In QTL Mapping by Bootstrapping. Genetics 143; 1013-1020
  19. 김문정,이제영, 여정수, 이용원, 조용주. 2003. 한우의 Chromosome 6번에서 BM4311의 중요 DNA Mining. Proceedings of the Spring Conference, Cheju National Uni