References
- Bae, J.-W, J.-J. Kim, C. O. Jeon, K. Kim, J. J. Song, S.-G. Lee, H. Poo, C.-M. Jung, Y-H. Park, M.-H. Sung. 2003. Application of denaturing gradient gel electrophoresis to estimate the diversity of commensal thermophiles. J. Microbiol. Biotechnol. 13: 1008- 1011.
- Ballard, R. D. 1977. Notes on a major oceanographic find. Oceanus 20: 35- 44.
- Bowman, J. P., J. Cavanaugh, J. J. Austin, and K. Sanderson. 1996.Novel psychrobacterspecies from Antarctic omithogenic soil. Int. J. Syst. Bacteriol. 46: 841- 848.
- Cary, S. C., M. T. Cottrell, J. L. Stein, F Camacho, and D. Desbruyeres. 1997. Molecular identification and localization of filamentous symbiotic bacteria associated with the hydrothermal vent annelid Alvinella pompejana. Appl. Environ. Microbiol. 63: 1124- 1130.
- Cavanaugh, C. M. 1985. Symbioses of chemoautotrophic bacteria and marine invertebrates from hydrothermal vents and reducing sediments. Bull. Bioi. Soc. Wash. 6: 373- 388.
- Cavanaugh, C. M. 1994. Microbial symbiosis: Patterns of diversity in the marine environment. Am. Zool. 34: 79- 89.
- Cavanaugh, C. M., S. L. Gardiner, M. L. Jones, H. W. Jannasch, and J. B. Waterbury. 1981. Prokaryotic cells in the hydrothermal vent tube worm Riftia pachyptila: Possible chemoautotrophic symbionts. Science 213: 340- 342.
-
Childress, J. J., R. W. Lee, N. K. Sanders, H. Felbeck, D. R. Oros, A. Toulmond, D. Desbruyeres, M. C. Kennicutt II, and J. Brooks. 1993. Inorganic carbon uptake in hydrothermal vent tubeworms facilitated by high environmental
$pCO_2$ . Nature 362: 147- 149. - Cho, J.-C., D.-H. Lee, Y-C. Cho, J.-c. Cho, and S.-J. Kim. 1996. Direct extraction of DNA from soil for amplification of 16S rRNA gene sequences by polymerase chain reaction. J. Microbial. 34: 229- 235.
- DeAngelis, M. A, M. D. Lilley, E. J. Olson, and J. A Baross. 1993. Methane oxidation in deep-sea hydrothermal plumes of the Endeavour segment of the ludan de Fuca Ridge. Deep-Sea Res. Part I 40: 1169- 1186.
- DeLong, E. E, D. G. Franks, and A. L. Alldredge. 1993. Phylogenetic diversity of aggregate-attached vs. free-living marine bacterialassemblages.Limnol. Oceanogr. 38: 924- 934.
- Devereux, R. and G. W. Mundfrom. 1994. A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in sandy marine sediment. Appl. Environ. Microbiol. 60: 3437- 3439.
- Di Meo, C. A, A. E. Wilbur, W. E. Holben, R. A Feldman, R. C. Vrijenhoek, and S. C. Cary. 2000. Genetic variation among endosymbionts of widely distributed vestimentiferan tubeworms. Appl. Environ. Microbiol. 66: 651- 658.
- istel, D. L., H. Felbeck, and C. M. Cavanaugh. 1994. Evidence for phylogenetic congruence among sulfur-oxidizing chemoautotrophic bacterial endosymbionts and their bivalve hosts. J. Mol. Evol. 38: 533- 542.
- Durand, P., A L. Reysenbach, D. Prieur, and N. Pace. 1993. Isolation and characterization of Thiobacillus hydrothermalis sp. nov., a mesophilic obligately chemolithotrophic bacterium isolated from a deep-sea hydrothermal vent in Fiji Basin. Arch. Microbiol. 159: 39- 44.
- Eisen, J. A., S. W. Smith, and C. M. Cavanaugh. 1992. Phylogenetic relationships of chemoautotrophic bacterial symbionts of Solemya velum (Mollusca: Bivalvia) determined by 16S rRNA J. Bacteriol. 174: 3416- 3421.
- Erauso, G., A L. Reysenbach, A Godfroy, J. R. Meunier, B. Crump, F. Partensky, J. A Baross, V. Marteinsson, G. Barbier, N. R. Pace, and D. Prieur. 1993. Pyrococcus abyssi sp. nov., a new hydrothermophilic archaeon isolated from a deep-sea hydrothermal vent. Arch. Microbiol. 160: 338- 349.
- Felbeck, H. 1981.Chemoautrophicpotential of the hydrothermal vent tube worm Riftia pachyptila Jones (Vestimentifera). Science 213: 336- 338.
- Fuhrman, J. A., K. McCallum, and A A Davis. 1993. Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans. Appl. Environ. Microbiol. 59: 1294- 1302.
- Giovannoni, S. J., T. B. Britschgi, C. L. Moyer, and K. G. Field. 1990. Genetic diversity in Sargasso Sea bacterioplankton. Nature (London) 345: 60- 63.
- Godfroy, A, F. Lesongeur, G. Raguenes, J. Querellou, E. Antoine, J. R. Meunier, J. Guezennec, and G. Barbier. 1997. Thermococcus hydrothermalis sp. nov, a new hydrothermophilic archeon isolated from a deep-sea hydrothermal vent. lnt. J. Syst. Bacterial. 47: 622- 626.
- Herzig, P. M., M. D. Hannington, and P. Stoffers. 1998. Petrology, gold mineralization and biological communities at shallow submarine volcanoes of the New Ireland Fore-arc (Papua New Guinea): Preliminary results of R/V Sonne cruise SO-133. InterRidge News 7: 34- 38.
- Hugenholtz, P., C. Pitulle, K. L. Hershberger, and N. R. Pace. 1998. Novel division level bacterial diversity in a Yellowstone hot spring. J. Bacteriol. 180: 366- 376
- Jannasch, H. W.and C.D. Taylor. 1984. Deep-sea microbiology. Annu. Rev. Microbiol. 38: 487 - 514.
- Jannasch, H. W. and C. O. Wirsen. 1979. Chemosynthetic primary production of east Pacific sea floor spreading centers. Bioscience 29: 592- 598.
- Kim, M.-H., S. T. Shim, Y. S. Kim, and K. H. Kyung. 2002. Diversity of Leuccnostocs on galic surface, and extreme environment. J. Microbiol. Biotechnol. 12: 497-502.
- Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111- 120.
- Kulm, L. D., E. Suess, J. C. Moore, B. Carson, B. T. Lewis, S. D. Ritger, D. C. Kadko, T. M. Thornburg, R. W. Embley, W. D. Rugh, G. J. Massoth, M. G. Langseth, G. R. Cochrane, and R. L. Scamman. 1986. Oregon subduction zone: Venting, fauna, and carbonates. Science 231: 561- 566.
- Kumar, S., K. Tamura, I. B. Jakobsen, and M. Nei. 2001. MEGA2: Molecular Evolutionary Genetics Analysis Software. Arizona State University, Tempe, AZ, U.S.A.
- Li, L., J. Guenzennec, P. Nichols, P.Henry, M. Yanagibauashi, and C. Kato. 1999. Microbial diversity in Nankai Trough sediments at a depth of 3,843 m. J. Oceanogr. 55: 635- 642.
- Li, L., C. Kato, and K. Horikoshi. 1999. Bacterial diversity in deep-sea sediments from different depths. Biodivers. Conserv. 8: 659- 677. https://doi.org/10.1023/A:1008848203739
- Li, L., C. Kato, and K. Horikoshi. 1999. Microbial diversity in sediments collected from the deepest cold-seep area, the Japan Trench. Mar. Biotechnol. 1: 391-400.
- Llobet-Brossa, H., R. Rossello-Mora, and R. I. Amann. 1998. Microbial community composition of Wadden Sea sediments as revealed by fluorescent in situ hybridization. Appl. Environ. Microbiol. 64: 2691- 2696.
- Lonsdale, P. 1977. Clustering of suspension feeding macrobenthos near abyssal hydrothermal vents at oceanic spreading centers. Deep Sea Res. 24: 857- 863.
- Ludwig, W., R. Rossello-Mora, R. Aznar, S. Klugbauer, S. Spring, K. Reetz, C. Beimfohr, E. Brockmann, G. Kirchhof, S. Dorn, M. Bachleitner, N. Klugbauer, N. Springer, D. Lane, R. Nietupsky, M. Weizenegger, and K. H. Schleifer. 1995. Comparative sequence analysis of 23S rRNA from Proteobacteria. Syst. Appl. Microbiol. 18: 164- 188.
- Maidak, B. L., J. R. Cole, T. G. Lilburn, C. T. Parker, Jr., P. R. Saxman, R. J. Farri, G. M. Garrity, G. J. Olsen, T. M. Schmidt, and J. M. Tiedje. 2001. The Ribosomal Database Project (The RDP-II). Nucleic Acids Res. 29: 173- 174.
- Massol-Deya, A. A, D. A Odelson, R. F. Hickey, and J. M. Tiedje. 1995. Bacterial community fingerprinting of amplified 16S and 16S-23S ribosomal RNA gene sequences and restriction endonuclease analysis (ARDRA), pp. 1- 8. In A D. L. Akkermans, J. D. van Elsas, and F. J. de Bruijn (eds.), Molecular Microbial Ecology Manual. Kluwer Academic Publishers, Dordrecht, The Netherlands.
- Moyer, C. L., F. C. Dobbs, and D. M. Karl. 1995. Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 61: 1555- 1562.
- Naganuma, T., C. Kato, H. Hirayama, N. Moriyama, J.Hashimoto, and K. Horikoshi. 1997. Intracellular occurrence of epsion-Proteobacterial 16S rDNA sequences in the vestimentiferan trophosome. J. Oceanogr. 53: 193- 197.
- Nelson, D. C. and C. R. Fisher. 1995. Chemoautotrophic and methanotrophic endosymbiotic bacteria at vents and seeps, pp. 125- 167. In D. M. Karl (ed.) Microbiology of Deep-Sea Hydrothermal Vent Habitats. CRC Press, Boca Raton, FL, U.S.A.
- Nelson, D. C., C. O. Wirsen, and H. W. Jannasch. 1989. Characterization of large autotrophic Beggiatoa abundant at hydrothermal vents of the Guaymas Basin. Appl. Environ. Microbiol. 55: 2909- 2917.
- O'Neill, K. R., S. M. Hinton, M. R. Sowlay, and R. R. Colwell. 1999. Uncultured hydrocarbon seep bacterium BPC023 and BPC036. GenBank accession no. AF154087 and AF154089.
- Ohta, S. and L. Laubier. 1987. Deep biological communities in the subduction zone of Japan from bottom photographs taken during 'Nautile' dives in the Kaiko project. Earth Planet Sci. Lett. 83: 329- 342. https://doi.org/10.1016/0012-821X(87)90075-6
- Polz, M. F. and C. M. Cavanaugh. 1995. Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site. Proc. Natl. Acad. Sci. USA 92: 7232- 7236.
- Polz, M. F., D. L. Distel, B. Zarda, R. Amann, H. Felbeck, J. A. Ott, and C. M. Cavanaugh. 1994. Phylogenetic analysis of a highly specific association between ectosymbiotic, sulfur-oxidizing bacteria and a marine nematode. Appl. Environ. Microbial. 60: 4461-4467.
- Rath, J., K Y. Wu, G. J. Hemdl, and E. F. DeLong. 1998. High phylogenetic diversity in a marine-snow-associated bacterial assemblage. Aquat. Microb. Ecol. 14: 261- 269.
- Ravenschlag, K., K Sahm, J. Pemtha1er, and R. Amann. 1999. High bacterial diversity in permanently cold marine sediments. Appl. Environ. Microbial. 65: 3982- 3989.
- Reichenbach, H. and M. Dworkin. 1992. The order Cytophagales, pp. 3631- 3687. In A. Balows, H. G. Trtiper, M. Dworkin, W. Harder, and K-H. Schleifer (eds.), The Prokaryotes, Vol. 4. Springer-Verlag, New York, N.Y., U.S.A.
- Reichenbach, H. and M. Dworkin. 1992. The order Cytophagales, pp. 3631- 3687. In A. Balows, H. G. Trtiper, M. Dworkin, W. Harder, and K-H. Schleifer (eds.), The Prokaryotes, Vol. 4. Springer-Verlag, New York, N.Y., U.S.A.
- Ruby, E. G., H. W. Jannasch, and W. G. Deuser. 1987. Fractionation of stablecarbon isotopes during chemoautotrophic growth of sulfur-oxidizing bacteria. Appl. Environ. Microbial. 53: 1940- 1943.
- Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular Cloning: A Laboratory Manual, 2nd Ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., U.S.A.
- Schmidt, T. M., E. F. DeLong, and N. R. Pace. 1991. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J. Bacterial. 173: 4371- 4378.
- Sibuet, M., S. K Juniper, and G. Pautot. 1988. Cold-seep benthic communities in the Japan subduction zones: Geological control of community development. J. Mar. Res. 46: 333- 348.
- Solangi, M. A., R. M. Overstreet, and A. L. Gannam. 1979. A filamentous bacterium on the brine shrimp and its control. Gulf Res. Rep. 6: 275- 281.
- Teske, A., K U. Hinrichs, V. Edgcomb, A. V. Gomez, D. Kysela, S. P. Sylva, M. L. Sogin, and H. W. Jannasch. 2002. Microbial diversity of hydrothermal sediments in the Guaymas Basin: Evidence for anaerobic methanotrophic communities. Appl. Environ. Microbial. 68: 1994- 2007.
- Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673- 4680.
- Tuttle, J. H. 1985. The role of sulfur-oxidizing bacteria at deep-sea hydrothermal vents. Bull. BioI. Soc. Wash. 6: 335-344