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β-Galactosidase Gene of Thermus thermophilus KNOUC112 Isolated from Hot Springs of a Volcanic Area in New Zealand: Identification of the Bacteria, Cloning and Expression of the Gene in Escherichia coli

  • Nam, E.S. (Department of Agricultural Science, Korea National Open University) ;
  • Choi, J.W. (Department of Agricultural Science, Korea National Open University) ;
  • Lim, J.H. (Department of Agricultural Science, Korea National Open University) ;
  • Hwang, S.K. (Department of Agricultural Science, Korea National Open University) ;
  • Jung, H.J. (Department of Agricultural Science, Korea National Open University) ;
  • Kang, S.K. (School of Agricultural Biotechnology, Seoul National University) ;
  • Cho, K.K. (Department of Animal Resource Technology, Jinju National University) ;
  • Choi, Y.J. (School of Agricultural Biotechnology, Seoul National University) ;
  • Ahn, J.K. (Department of Agricultural Science, Korea National Open University)
  • Received : 2004.03.17
  • Accepted : 2004.07.20
  • Published : 2004.11.01

Abstract

To isolate the $\beta$-galactosidase producing thermophilic bacteria, samples of mud and water were collected from hot springs of avolcanic area near Golden Springs in New Zealand. Among eleven isolated strains, the strain of KNOUC112 produced the highest amounts of $\beta$-galactosidase at 40 h incubation time (0.013 unit). This strain was aerobic, asporogenic bacilli, immobile, gram negative, catalase positive, oxidase positive, and pigment producing. Optimum growth was at 70-72$^{\circ}C$, pH 7.0-7.2, and it could grow in the presence of 3% NaCl. The main fatty acids of cell components were iso-15:0 (30.26%), and iso-17:0 (31.31%). Based on morphological and biochemical properties and fatty acid composition, the strain could be identified as genus Thermus, and finally as Thermus thermophilus by phylogenetic analysis based on 16S rRNA sequence. So the strain is designated as Thermus thermophilus KNOUC112. A gene from Thermus thermophilus KNOUC112 encoding $\beta$-galactosidase was amplified by PCR using redundancy primers prepared based on the structure of $\beta$-galactosidase gene of Thermus sp. A4 and Thermus sp. strain T2, cloned and expressed in E. coli JM109 DE3. The gene of Thermus thermophilus KNOUC112 $\beta$-galactosidase(KNOUC112$\beta$-gal) consisted of a 1,938 bp open reading frame, encoding a protein of 73 kDa that was composed of 645 amino acids. KNOUC112$\beta$-gal was expressed as dimer and trimer in E. coli JM109 (DE3) via pET-5b.

Keywords

References

  1. Alfredsson, G. A., S. Baldursson and J. K. Krjstjansson. 1985. Nutritional diversity among Thermus spp. isolated from Icelandic hot spring. Syst. Appl. Microbiol. 6:308-311.
  2. Asubel, F. M., R. Brent, R. E. Kingston, D. D. Moor, J. G. Seidman, J. A. Smith and K. Struhl. 1998. Current protocols in molecular biology. 13.6.5. Wiley.
  3. Berger, J. L., B. H. Lee and C. Lacroix. 1997. Purification, properties and characterization of a high-molecular-mass $\beta$- galactosidase isoenzyme from Thermus aquaticus YT-1. Biotechnol. Appl. Biochem. 25:29-41.
  4. Brady, D., R. Merchant, L. Michael and A. P. McHale. 1995. Isolation and partial characterization of $\beta$-galatoaisdase activity produced by a thermotolerant strain of Kluyveromyces marxianus during growth on lactose-containing media. Enz. Microbe. Technol. 17:696-699.
  5. Brock, T. D. 1984. Genus Thermus. In: (Ed. N. R. Kriegand and J. G. Holt) Bergey’s manual of systematic bacteriology, vol. 1. pp. 233-237. Williams & Wilkins. Baltimore.
  6. Brock, T. D. and M. L. Brock. 1967. The measurement of chlorophyll, primary productivity, photophospholylation and macromolecules in benthicalgal mats. Limnology and Oceanography. 12:600-605.
  7. Campbell, L. L. and E. Pace. 1968. Physiology of growth at high temperatures. J. Appl. Bacteriol. 31:24-35.
  8. Choi. Y. J., H. Kim, B. H. Lee and J. S. Lee. 1995. Purification and characterization of $\beta$-galactosidase from alkalophilic and thermophilic Bacillus sp.TA-11. Biotechnol. Appl. Biochem. 22: 191-201.
  9. Chung, A. P., F. A. Rainey, M. Valente, M. F. Nobre and M. S. da Costa. 2000. Thermus sp. Nov. and Thermus antranikianii sp. Nov., two new species from Iceland. Int. J. Syst. Evol. Microbiol. 50:209-217.
  10. Craven, G. R., E. Steers and C. B. Enfinsen. 1965. Purification, composition and molecular weight of the $\beta$-galactosidase of Escherichia coli K-12. J. Bio. Chem. 240:2468-2477.
  11. Dabrowski, S., G. Sobiewska, J. Maciunska, J. Synowiecki and J. Kur. 2000. Cloning, expression, and purification of the His6-tagged thermostable $\beta$-galactosidase from Pyrococcus woesei in Escherichia coli and some properties of the isolated enzyme. Protein Expression and Purification. 19:107-112.
  12. Degryse, E., N. Glansdorff and A. Pierard. 1978. A comparative analysis of extreme thermophilic bacteria belonging to the genus Thermus. Arch. Microbiol. 117:189-196.
  13. Dumortier, V. C. Brassart and S. Bouquelet. 1994. Purification and properties of a $\beta$-galactosidase from Bifidobacterium bifidum exhibiting a transgalactosylation reaction. Biotechnol. Appl. Biochem. 19:341-354.
  14. Felsenstein, J. 1993. PHYLIP: Phylogenetic Inference Package, version 3.5. Department of Genetics, University of Washington, Seattle, WA, USA.
  15. Hughes, D. B. and D. G. Hooner. 1991. Bifidobacteria: their potential for use in American dairy products. Food Technol. 45: 64-83.
  16. Jacobson, R. H., X-J. Zhang, R. F. DuBose and B. W. Matthews. 1994. Three dimensional structure of $\beta$-galactosidase from E. coli. Nature. 369:761-766.
  17. Kern, F. Jr. and J. E. Struthers Jr. 1966. Intestinal lactose deficiency and lactose intolerance in adults. J. Am. Med. Assoc. 195:143-147.
  18. Kulikova, A. K., A. S. Tikhomirova and R. V. Feniksova. 1972. Purification and properties of Saccharomyces fragilis $\beta$-galactosidase. Biokhimiya. 37(2):405-419.
  19. Kuykendall, L. D., M. A. Roy, J. J. O'Neil and T. E. Devine. 1988. Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int. J. Syst. Bacteriol. 38:358-361.
  20. Kwak, H. S., J. B. Lee and J. Ahn. 2002. Treatment of microencapsulated $\beta$-galactosidase with zone: Effect on enzyme and Microoganism. Asian-Aust. J. Anim. Sci. 15:596-601.
  21. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 227:680-685. https://doi.org/10.1038/227680a0
  22. Maidak, B. L., G. J. Olsen, N. Larson, R. Overbeck, M. J. MaCoughey and C. R. Woese. 1996. The Ribosomal Database Project (RDP). Nucleic acids Res. 24:82-85.
  23. Manaia, C. M. and M. S. da Costa. 1991. Characterization of halotolerant Thermus isolate from shallow marine hot springs on S. Miguel, Azore. J. Gen. Microbial. 137:2643-2648.
  24. Mcfeters, G. A., W. E. Sandine, R. R. Becker and P. R. Elliker. 1969. Some factors affecting association-dissiciation of $\beta$-galactosidase from Streptococcus lactis 7962. Canadian J. Microbio. 15:105-110.
  25. Moore, J. B., P. Markiewicz and J. H. Miller. 1994. Identification and sequencing of the Thermotoga maritima lacZ gene, part of a divergently transcribed operon. Gene. 147:101-106.
  26. Nobre, M. F., L. Carreto, R. Wait, S. Tenreiro, O. Fernandes, R. J. Sharp and M. S. da Costa. 1996. Fatty acid composition of the species of the genera Thermus and Meiothermus. Syst. Appl. Microbiol. 19: 303-311.
  27. Ohtsu, N., H. Motoshima, K. Goto, F. Tsukasaki and H. Matsuzawa. 1998. Thermostable$\beta$-galactosidase from an extreme thermophilic, Thermus sp. A4: Enzyme purification and characterization, and gene cloning and sequencing. Biosci. Biotechnol. Biochem. 6298:1539-1545.
  28. Ohtsuka, K., V. Benno, K. Endo, O. Ozawa, H. Veda, T. Uchida and T. Mitsuoka. 1989. Effects of 4-galactosyllactose intake on human fecal microflora. Bifidus. 2:143-149.
  29. Onishi, N. and T. Tanaka. 1995. Purification and properties of a novle thermostable galacto-oligosaccharide-producing$\beta$- galactosidase from Sterigmatomyces elviae (BS8119). Appl. Environ. Microbiol. 61:4022-4025.
  30. Rainey, F. A., N. Ward-Rainey, R. M. Kroppenstedt and E. Stackebrandt. 1996. The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int. J. Syst. Bacteriol. 46:1088-1092.
  31. Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstruction phylogenetic trees. Mol. Biol. Evol. 4:406-42
  32. Santos, M. A., R. A. D. Williams and M. S. da Costa. 1989. Numerical taxonomy of Thermus isolated from hot springs in Portugal. Syst. Appl. Microbial. 12:310-315.
  33. Thomas, K. N. and R. K. William. 1986. Industrial application of thermostable enzyme pp. 197-215. In: (Ed. T. D. Brock) Thermophiles, John Wiley & Sons. Inc. New York.
  34. Vian, A., A. V. Carrascosa, J. L. Garcia and E. Corted. 1998. Structure of $\beta$-galactosidase gene from Thermus sp. strain T2: Expression in Eschrichia coli and purification in a single step of an active fusion protein. Appl. Environ, Microbiol. 64(6):2187-2191.
  35. Wickson, V. M. and R. E. Huber. 1970. The non simultaneous dissociation and loss of activity of $\beta$-galactosidase in urea. Biochem. Biophys. Acta. 207:150-155.
  36. Williams, R. A. D., K. E. Smith, S. G. Welch, J. Micallefand and R. J. Sharp. 1995. DNA relatedness of Thermus strains, description of Thermus brokianus sp. Nov., and proposal to reestablish Thermus thermophilus (Oshima and Imahori). Int. J. Syst. Bacteriol. 45:495-499.

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