DOI QR코드

DOI QR Code

Bioinformatics Analysis of SARS Proteins and Molecular Dynamics Simulated Structure of an Alpha-helix Motif

  • Reddy, Amarender D. (National Creative Research Initiative Center for Superfunctional Materials, Department of Chemistry, Division of Molecular and Life Sciences, Pohang University of Science and Technology) ;
  • Suh, Seung-Bum (National Creative Research Initiative Center for Superfunctional Materials, Department of Chemistry, Division of Molecular and Life Sciences, Pohang University of Science and Technology) ;
  • Ghaffari, Reza (National Creative Research Initiative Center for Superfunctional Materials, Department of Chemistry, Division of Molecular and Life Sciences, Pohang University of Science and Technology) ;
  • Singh,, N. Jiten (National Creative Research Initiative Center for Superfunctional Materials, Department of Chemistry, Division of Molecular and Life Sciences, Pohang University of Science and Technology) ;
  • Kim, Dae-Jin (Bioinformatics S/W Research Center, Department of Computer Sciences and Engineering, Pohang University of Science and Technology) ;
  • Han, Joon-Hee (Bioinformatics S/W Research Center, Department of Computer Sciences and Engineering, Pohang University of Science and Technology) ;
  • Kim, Kwang S. (National Creative Research Initiative Center for Superfunctional Materials, Department of Chemistry, Division of Molecular and Life Sciences, Pohang University of Science and Technology)
  • Published : 2003.07.20

Abstract

Keywords

References

  1. Rota, P. A.; Oberste, M. S.; Monroe, S. S.; Nix, W. A.;Campagnoli, R. et al., Science 2003, 300, 1394. https://doi.org/10.1126/science.1085952
  2. Marra, M. A.;Jones, S. J. M.; Astell, C. R.; Holt, R. A.; Wilson, A. B. et al.,Science 2003, 300, 1399. https://doi.org/10.1126/science.1085953
  3. Anand, K.; Zeibuhr, J.; Wadhwani,P.; Mesters, J. R.; Hilgenfeld, R. Science 2003, 300, 1763. https://doi.org/10.1126/science.1085658
  4. BLAST and FASTA: http://www.ncbi.nih.gov/
  5. FUGUE: http://www-cryst.bioc.cam.ac.uk/fugue/
  6. 3D PSSM: http:// www.sbg.bio.ic.ac.uk/servers/3dpssm/
  7. TMHMM: http://www.cbs.dtm.dk/services/TMHMM
  8. PP: http://cubic.bioc.columbia.edu/predictprotein/
  9. PSA: http://bmerc-www.bu.edu/psa/
  10. BioEdit: http://www.mbio.ncsu.edu/BioEdit/bioedit.html
  11. ClustalX: http://www-igbmc.u-strasbg.fr/BioInfo/ClustalX/
  12. Son, H. S.; Hong, B. H.; Lee, C.-W.; Yun, S.; Kim, K. S. J. Am.Chem. Soc. 2001, 123, 514. https://doi.org/10.1021/ja0014640
  13. Kim, K. S. Bull. Korean Chem.Soc. 2003, 24, 757. https://doi.org/10.1007/s11814-007-0038-2
  14. Kim, K. S.; Dupuis, M.; Lie, G. C.; Clementi, E. Chem. Phys.Lett. 1986, 131, 451. https://doi.org/10.1016/0009-2614(86)80564-4
  15. Kim, K. S. Bull. Korean Chem. Soc.1993, 14, 18.
  16. Gene v.73 CLUSTAL: a package for performing multiple sequence alignment on a microcomputer Higgins,D.G.;Sharp,P.M. https://doi.org/10.1016/0378-1119(88)90330-7
  17. Methods Enzymol. v.266 Using CLUSTAL for multiple sequence alignments Higgins, D. G.;Thompson, J. D.;Gibson, T. J.
  18. J. Am. Chem. Soc. v.123 Son, H. S.;Hong, B. H.;Lee, C.-W.;Yun, S.;Kim, K. S. https://doi.org/10.1021/ja0014640
  19. Bull. Korean Chem. Soc. v.24 Kim, K. S. https://doi.org/10.5012/bkcs.2003.24.6.757
  20. Chem. Phys. Lett. v.131 Kim, K. S.;Dupuis, M.;Lie, G. C.;Clementi, E. https://doi.org/10.1016/0009-2614(86)80564-4
  21. Bull. Korean Chem. Soc. v.14 Kim, K. S.

Cited by

  1. Identification of a Molecular Marker and Chromosome Mapping of the 5S rRNA Gene inAllium sacculiferum vol.50, pp.6, 2007, https://doi.org/10.1007/BF03030614
  2. Independent chromosomal localization of two different size 5S rDNA of Allium victorialis var. platyphyllum by sequential fluorescence in situ hybridization in accordance with sequence polymorphism vol.32, pp.2, 2010, https://doi.org/10.1007/s13258-009-0804-0
  3. An Easy-to-Use Three-Dimensional Molecular Visualization and Analysis Program: POSMOL vol.25, pp.7, 2004, https://doi.org/10.5012/bkcs.2004.25.7.1061
  4. Physical Chemistry Research Articles Published in the Bulletin of the Korean Chemical Society: 2003-2007 vol.29, pp.2, 2008, https://doi.org/10.5012/bkcs.2008.29.2.450
  5. Anti-HIV drug repurposing against SARS-CoV-2 vol.10, pp.27, 2003, https://doi.org/10.1039/d0ra01899f