P22-Based Challenge Phage Constructs to Study Protein-Protein Interactions between the $\sigma$$^{54}$-Dependent Promoter, dctA, and Its Transcriptional Regulators

  • Song, Jeong-Min (Department of Ophthalmology and The Institute of Vision Research, Yonsei University College of Medicine) ;
  • Kim, Eungbin (Department of Biology and Institute of Bioscience and Biotechnology, Yonsei University) ;
  • Lee, Joon H. (Protein Netwark Research Center, Yonsei University)
  • Published : 2002.09.01

Abstract

To study interactions between $C_{4}$-dicarboxylic acid transport protein D and E$\sigma$$^{54}$ in the dctA promoter regulatory region, we used the challenge phage system. An ant'-`lac fusion was recombined onto the challenge phage, and this ant'-`lac fusion along with Pant and the R. meliloti dctA promoter regulatory region were cloned onto a plasmid. The plasmid bearing the ant'-`lac fusion was used as a reporter plasmid in a coupled transcription-translation system. Addition of purified $\sigma$$^{54}$ to the coupled system specifically repressed transcription of the plasmid-borne ant'-`lac fusion. When DCTD was added along with $\sigma$$^{54}$ to the coupled system, transcription of the ant'-`lac fusion was even further repressed, suggesting that DCTD may stabilize closed complexes between E$\sigma$$^{54}$ and the dctA promoter.

Keywords

References

  1. EMBO J v.11 The prokaryotic enhancer binding protein NTRC has an ATPase activity which is phosphorylated and DNA dependent Austin, S;R. Dixon
  2. Bacterial sigma factors Transcription regulation Gross, C. A;M. Lonetto;R. Losick;S. L. McKnight(eds.);K. R. Yamamoto(eds.)
  3. Cell v.63 The integration host factor stimulates interaction of RNA polymerase with NIFA, the transcriptional activator for nitrogen fixation operons Hoover, T. R;E. Santero;S. Porter;S. Kustu
  4. J. Microbiol v.38 P22-based challenge phage constructs to study DNA-protein interactions between the σ54-dependent promoter, dctA, and its transcriptional regulators Kim, E;D. Kim;J. H. Lee
  5. Proc. Natl. Acad. Sci. USA v.92 Protein cross-linking studies suggest that Rhizobium meliloti DCTD, a σ54-dependent transcriptional activator interacts with σ54 and the β-subunit of RNA polymerase Lee, J. H;T. R. Hoover
  6. J. Biol. Chem v.269 Constitutive ATP hydrolysis and transcription activation by a stable, truncated form of Rhizobium meliloti DCTD, a σ54-dependent transcriptional activator Lee, J. H;D. Scholl;B. T. Nixon;T. R. Hoover
  7. Methods in Moleculaar genetics Maloy, S;P. Youserian
  8. Science v.243 Function of a bacterial activator protein that binds to transcriptional enhancers Popham, D. L;D. Szeto;J. Keener;S. Kustu
  9. Proc. Natl. Acad. Sci. USA v.86 In vitro activity of the nitrogen fixation regulatory protein NIFA Santero, E;T. R. Hoover;J. Keener;S. Kustu
  10. Microbiol. Rev v.42 Molecular genetics of bacteriophage P22 Susskin, M. M;D. Botstein
  11. Cell v.67 The phosphorylated from of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcription Weiss, D. S;J. Batut;K. E. Klose;J. Keener;S. Kustu