Attribution of PAH Degradation of Sphingomonas chungbukensis DJ77 to the Plasmid pSY1

Sphingomonas chungbukensis DJ77에 존재하는 Plasmid pSY1의 PAH 분해능

  • 박승기 (충북대학교 생명과학부) ;
  • 김성재 (미국국립독성연구소) ;
  • 신희정 (충북대학교 생명과학부) ;
  • 김영창 (충북대학교 유전공학연구소)
  • Published : 2001.06.01

Abstract

Sphingomonas chungbukensis DJ77 is able to use phenanthrene and biphenyl as the sole carbon and energy source. Mitomycin C curing experiment suggested that polyaromatic hydrocarbon (PAH) utilization in strain DJ77 was plasmid-encoded. The plasmid cured strains were failed to grow on the minimal medium sprayed with biphenyl or phenanthrene. This was evident from southern hybridizations using a previously cloned DNA segment as a probe. There were positive signals in the palsmid DNA of the wild-type strain DJ77 and the absence of hybridizations with chromosomal DNA from the plasmid DNA of the wild-type strain DJ77 and the absence of hybridizations with chromosomal DNA from the palsmid-cured mutant strains.

Sphingomonas chungbukensis DJ77에서 난분해성 물질 분해 유전자가 chromosome 또는 plasmid 존재하는지를 규명하였다. 야생주 DJ77의 plasmid를 mitomycin C를 이용하여 curing 시킨 후, 각각 phenanthrene과 biphenyl이 단일 탄소원으로 첨가된 최소배지에서 배양한 결과 야생주는 성장을 하지만 plasmid가 제거된 DJ77은 성장하지 않았다. 각각의 plasmid DNA를 분리한 수 이미 클로닝된 방향족 탄화수소 분해에 관련된 DNA를 probe로 하여 Southern hybridization을 한 결과 야생주에서만 positive signal을 발견할 수 있었다.

Keywords

References

  1. Gene v.85 Nucleotide sequence and expression of the catechol 2,3-dioxygenase-encoding gene of phenol-catabolizing Pseudomonas CF600 Bartilson, M;V. Shingler
  2. J. Gen. Microbiol. v.113 Identification and characterization of large plasmids in Rhizobium meliloti using agarose gel electrophoresis Casse, F.;C.Boucher;J.S. Julliot;M. Michel;J. Denarie
  3. Analytical Biochem. v.76 Isolation of covalently closed circular DNA of high molecular weight from bacteria Currier, T.C.;E.W. Nester
  4. J. Bacteriol. v.155 Naphthalene dioxygenase: Purification and properties of a terminal oxygenase component Ensley, B.D.;D.T. Gibson.
  5. Mol. Gen. Genet. v.239 Comparison of the nucleotide sequences of the meta-cleavage pathway genes of TOL plasmid pWW0 from Pseudomonas putida with other meta-cleavage genes suggests that both single and multiple uncleotide substitutions contribute to enzyme evolution Harayama, S.;M. Rekik
  6. Appl Environ. Microbiol. v.54 Pyrene degradation by a Mycobacterium sp.: identification of ring oxidation and ring fission products Heitkamp, M.A.;J.P. Freeman;D.W. Miller;C.E. Cerniglia
  7. J. Bacteriol. v.165 Plasmid determined cadmium resistance on Pseudomonas putida GAM-1 isolated from soil Horitsu, H.;Y. Kazumi;F. Akira
  8. Ph.D. thesis. Chungbuk national University Kim, Seong-Jae
  9. Int. J. Sys. Env. Microbiol. v.50 Polyphasic assignment of an aromatic-degrading Pseudomonas sp., strain DJ77, in the genus Sphingomonas as Sphingomonas chungbukensis sp. nov. Kim, S.;J. Chun;K.S. Bae;Y.C, Kim
  10. Biochem. Biophys. Res. Commun. v.240 Nucleotide sequence of the Pseudomonas sp. DJ77 phnG gene encoding 2-hydroxymuconic semialdehyde dehydrogenase Kim, S.-J.;H.-J. Shin;Y. Kim;S.J. Kim;Y.C. Kim
  11. Biochem. Biophys. Res. Commun. v.238 Localization and sequence analysis of the phnH gene encoding 2-hydroxypent-2,4-dienoate hydratase in Pseudomonas sp.strain DJ77 Kim, S.-J.;O.K. Kweon;Y. Kim;C.K. Kim;K.S. Lee;Y.C. Kim
  12. Kor. J. Appl. Microbiol. Biotechnol. v.25 Nucleotide sequence of the phnR gene encoding rieske-type ferredoxin from Pseudomonas sp. strain DJ77. Kim, S.;Y.C. Park;C.K. Kim;J.Y. Kim;K.S. Lee;K.H. Min;Y.C. Kim
  13. Kor. J. Microbiol. v.30 Molecular cloning of a gene cluster for phenanthrene degradation from Pseudomonas sp. DJ77 and its expression in Escherichia coli Kim, Y.C.;K.S. Youn;M.S. Shin;H.S. Kim;M.S. Park;H.J. Park
  14. Kor. J. Microbiol. v.30 Nucleotide sequence of the phnE gene encoding extradiol dioxygenase from Pseudomonas sp. strain DJ77 Kim, Y.C.;M.S.Shin;K.S. Youn;Y.S. Park;U.H. Kim
  15. Experiments in Molecular Genetics Miller, J.H.
  16. J. Bacteriol. v.181 Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199 Romine, M.F.;L.C. Stillwell;K.K. Wong;S.J. Thurston;E.C.Sisk;C Sensen;T. Gaasterland;J.K. Fredrickson;J.D. Saffer
  17. J. Bacteriol. v.182 Novel phenanthrene dioxygenase from Nocardioides sp. strain KP7: Expression in Escherichia coli Saito, A.;I. Tokuro;Harayama S.
  18. Infect. Immun. v.51 Molecular alteration of the 140-megad-alton plasmid associated with loss of virulence and Congo red binding activity in Shigella flexneri Sasakawa, C.;K. Kamata;T. Sakai;S.Y. Murayama;S. Makino;M. Yoshikawa
  19. Appl. Environ. Microbiol. v.55 Novel pathway of toluene catabolism in the trichloroethylene-degrading bacterium G4 Shields, M.S.;S.O. Montgomery;P.J. Chapman;S.M. Cuskey;P.H. Pritchard
  20. Proc. Natl. Acad. Sci. USA. v.79 Plasmid gene organization: naphthalene/salicylate oxidation Yen, K.M.;I.C. Gunsalus
  21. FEMS Microbiol. Lett. v.154 Novel organization of catechol meta-pathway genes in Sphingomonas sp.HV3 pSKY4 plasmid Yrjala, K.;L. Paulin;M. Romantschuk