Structural and Functional Importance of Two Glutamate Residues, Glu47 and Glu146, Conserved in N-Carbamyl D-Amino Acid Amodohydrolases

  • Oh, Ki-Hoon (Department of Biological Sciences, Korea Advanced institute of Science and Technology) ;
  • Kim, Geun-Joong (Department of Biological Sciences, Korea Advanced institute of Science and Technology) ;
  • Park, Joo-Ho (Department of Biological Sciences, Korea Advanced institute of Science and Technology) ;
  • Kim, Hak-Sung (Department of Biological Sciences, Korea Advanced institute of Science and Technology)
  • Published : 2001.02.01

Abstract

The mutant enzymes of N-carbamyl-D-amino aicd amidohydrolase (N-carbamylase) from Agrobacterium radiobacter NRRL B11291, showing a negligible activity, were selected from the library generated by random mutagenesis. From the sequence analysis, these mutants were found to contain the amino acids substitutions at Cys172, Glu47, and Glu146. Previously, Cys172 was reported to be necessary for the enzyme catalysis. The chemical modification of the N-carbamylase by carboxyl group specific chemical reagent, 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide(EDC), resulted in a loss of activity. The replacement of glutamic acids with glutamines by site-directed mutagenesis led to aggregation of the enzymes. Mutant enzymes fused with maltose binding protein (MBP) were expressed in soluble form, but were inactive. These results indicate that two glutamic acid residues play an important role in structure and function of the N-carbamylase. Multiple sequence alignment of the related enzymes revealed that Glu47 and Glu146 are rigidly conserved, which suggests that tese residues are crucial for the structure and function of the functionally related C-N hydrolases.

Keywords

References

  1. Progress in Industrial Microbiology Biotechnology of Amino Acid Production v.24 Microbial production of D-p-hydroxyphenylglycin Aida, K.;I. Chibada;K. Nakayama;K. Takinami;H. Yamada
  2. Eur. J. Biochem. v.205 Cloning and expression of an Arabidopsis nitrilase which can convert indole-3-acetonitrile to the plant hormone, indole-3-acetic acid Bartling, D.;M. Seedorf;A. Mithofer;E. W. Weiler
  3. FEMS Microbiol. Lett. v.145 Indentification, sequencing and mutagenesis of the gene for a $_D$-carbamoylase from Agrobacterium radiobacter Buson, A.;A. Negro;L. Grassato;M. Tagliaro;M. Basaglia;C. Grandi;A. Fontana;M. P. Nuti
  4. Anal. Biochem. v.72 A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Bardford, M. M.
  5. Protein Sci. v.3 A new family of carbon nitrogen hydrolases Bork, P.;E. V. Koonin
  6. Microbiology v.144 Efficient converstion of 5-substituted hydantoins to $_D$-α-amino acids using recombinant Escherichia coli strains Grifantini, R.;G. Galli;G. Carpani;C. Pratesi;G. Frascotti;G. Grandi
  7. J. Biol. Chem. v.171 Topolo-gical mapping of the cysteine residues of N-carbamy1-$_D$-amino-acid amidohydrolase and their role in enzymatic activity Grifantini, R.;C. Pratesi;G. Galli;G. Grandi
  8. Biosci. Biotechnol. Biochem. v.62 Screening, characterization, and cloning of the gene for N-carbamy1-$_D$-amino acid amidohydrolase from thermo-tolerant soil bacteria Ikenaka, Y.;H. Nanba;Y. Yamada;K. Yajima;M. Takano;S. Takahashi
  9. Enzyme Microbiol. Technol. v.17 Optimization of the enzymatic synthesis of $_D$-p-hydroxyphenylglycine from $_DL$-5-substituted hydantoin using $_D$-hydantoinase and N-carbamoylase Kim, G. J.;H. S. Kim
  10. Biochem. J. v.330 Identification of the structural similarity in the functionally related amidohydrolases on the cyclic amide ring Kim, G. J.;H. S. Kim
  11. J. Microbiol. Biotechnol. v.9 Roles of the conserved carboxylic residues in the active-site of '5-3' exonuclease of Taq DNA polymerase Kim, Y.;J. C. Shin
  12. Biochem. Biophys. Res. Comm. v.253 Nitrilase catalyzes amide hydrolysis as well as nitrile hydrolysis Kobayashi, M.;M. Goda;S. Shimizu
  13. J. Biol. Chem. v.268 Cloning sequencing, and expression of a cDNA encoding β-alanine synthase from rat liver Kvalnes-Krick, K. L.;T. W. Traut
  14. FEMS Microbiol. Lett. v.120 Versatile Nitrilases Nitrile hydrolyzing enymes Kobayashi, M.;S. Schimizu
  15. Biotechnol. Appl. Biochem. v.25 The aim of industrial enzymatic amoxycillin production: Characterization of novel carbamoylase enzyme in the from of a crude, cell free extract Louwrier, A.;C. J. Knowles
  16. Technique v.1 A method for random mutagenesis of a defined DNA segment using a modified polymerase chain reaction Leung, D. W.;E. Chen;D. V. Goeddel
  17. Nature v.227 Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Laemmli, U. K.
  18. Enzyme Microb. Technol. v.10 Stereo-and substrate-specificity of a $_D$-hydantoinase and a $_D$-N-carbamyl amino acid amidohydrolase of Arthrobacter crystallopoietis AM2 Moller, R.;C. Syldatk;M. Schulze;F. Wagner
  19. Arch. Biochem. Biophys. v.107 Substrate specificity and possible mode of action Makadevan, S.;K. V. Thimann
  20. Biosci. Biotechnol. Biochem. v.62 Isolation of Agrobacterium sp. strain KNK712 that produces N-carbamyl-$_D$-amino acid amidohydrolase: Cloning of the gene for this enzyme, and properties of the enzyme Nanba, H.;Y. Ikenaka;Y. Yamada;K. Yajima;M. Takano;S. Takahashi
  21. Biosci. Biotechnol. Biochem. v.62 Immobili-zation of N-carbamy1-$_D$-amino acid amidohydrolase Nanba, H;Y. Ikenaka;Y. Yamada;K. Yajima;M. Takano;K. Ohkubo;Y. Hiraishi;K. Yamada;S. Takahashi
  22. FEBS Lett. v.367 Pseudomonas aeruginosa aliphatic amidase is related to the nitrilase/cyanide hydratase enzyme family and Cys166 is predicted to be the active site nucleophile of the catalytic mechanism Novo, C.;R. Tata;A. Clemete;P. R. Brown
  23. Biotechnol. Bioeng. v.13 Microbial transformation of racemic hydantoins to $_D$-amino acids Olivieri, R.;E. Fascetti;L. Angelini;L. Degen
  24. Eur. J. Biochem. v.212 N-carbamoyl-$_D$-amino acid amidohydrolase from Comamonas sp. E222c Purification and characterization Ogawa, J.;S. Shimizu;H. Yamada
  25. J. Biotechnol. v.38 Thermostable N-carbamol-$_D$-amino acid amidohydrolase: Screen-ing, purification and characterization Ogawa, J.;M. C Chung;S. Hida;H. Yamada;S. Shimizu
  26. Biotechnology Progress. v.16 Production of $_D$-amino acid using whole cells of recombinant Escherichia coli with separately and coexpressed $_D$-hydantoinase and N-carbamoylase Park, J. H.;G. J. Kim;H. S. Kim
  27. Appl. Microbiol. Biotechnol. v.33 $_D$-p-hydroxyphenylglycine production from $_DL$-5-p-hydroxyphenylhydantoin by Agrobacterium sp. Runser, S. M.;N. Chinski;E. Ohleyer
  28. J. Microbiol. Biotechnol. v.9 The role of tryptophan and histidine residues in the catalytic activities of β-cyclodextrin glucanotransferase from Bacillus firmus var. Alkalophilus Shin, H. D.;C. Kim;Y. H. Lee
  29. Gene v.116 Cloning and primary structure of the wide-spectrum amidase from Brevibacterium sp. R312:High homology to the amiE product from Pseudomonas aeruginosa Soubrier, F.;S. Levy-Schil;J. F. Mayaux;D. Petre;A. Arnaud;J. Crouzet
  30. Adv. Biochem. Eng. Biotechnol. v.41 Production of optically pure $_D$- and $_L$-amino acids by bioconversion of $_D$,$_L$-5-monosubstituted hydantoin derivatives Syldatk, C.;A. Laufer;R. Muller;H. Hake
  31. Appl. Microbiol. Biotechnol. v.50 Cloning and expression of a gene encoding cyanidase from Pseudomonas stutzeri AK61 Watanabe, A.;K. Yano;K. Ikebukuro;I. Karube
  32. Agric. Biol. Chem. v.51 Screening of microorganisms producing $_D$-p-hydroxyphenyl-glycine form $_DL$-5-(p-hydroxyphenly) hydantoin Yokozeki, K.;S. Nakamori;C. Eguchi;K. Yamada;K. Mitsugi
  33. Biochem. J. v.303 Chemical modification of penicillium 1,2-α-$_D$-mannosidase by water-soluble carbodi-imide: Identification of a catalytically important aspartic acid residue Yoshida, T.;K. Maeda;M. Kobayashi;E. Ichishima