Microbiology and Biotechnology Letters (한국미생물·생명공학회지)

The Korean Society for Microbiology and Biotechnology (한국미생물·생명공학회)
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Pseudomonas sp. Strain DJ77에서 Rieske-Type의 Ferredoxin을 암호화하는 phnR 유전자의 구조

  • Published : 1997.08.01
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Abstract

One of the three components of the phenanthrene dioxygenase which is required for conversion of phenanthrene to cis-phenanthrene dihydrodiol, Rieske-type ferredoxin encoded by phnR has been cloned and sequenced from Pseudomonas sp. strain DJ77. The gene phnR is positioned at the downstream of phnQ encoding 2,3-dihydroxybiphenyl 1,2-dioxygenase. The PhnR ferredoxin contains 108 amino acids with a Mr of 11,355. The deduced amino acid sequence of the PhnR ferredoxin is 35-79% identical to those of homologous ferredoxins encoded by various genes.

Keywords

References

  1. Biochemistry v.14 Initial reactions in the oxidation of naphthalene by Pseudomonas putida Jeffrey, A. M.;H.J.C. Yeh;D. M. Jerina;T. R. Patel;J. F. Davey;D. T. Gibson
  2. J. Bacteriol. v.149 Oxidation of naphthalene by a multicomponent enzyme system from Pseudomonas sp. strain NCIB9816 Ensley, B. D.;D. T. Gibson;A. L. Laborde
  3. J. Bacteriol. v.155 Naphthalene dioxygenase: Purification and properties of a terminal oxygenase component Ensley, B. D.;D. T. Gibson
  4. J. Bacteriol. v.172 Purification and Properties of NADH-FerredoxinNAP Reductase, a component of Naphthalene dioxygenase from Pseudomonas sp. Strain NCIB 9816 Haigler, B. E.;D. T. Gibson
  5. J. Bacteriol. v.172 Purification and Properties of FerredoxinNAP, a component of Naphthalene dioxygenase from Pseudomonas sp. Strain NCIB 9816 Haigler, B. E.;D. T. Gibson
  6. Biochem. J. v.177 Properties of the iron-sulfur proteins of the benzene dioxygenase system from Pseudomonas putida Crutcher, S. E.;P. J. Geary
  7. Biochem. J. v.146 Purificatio and some properties of a soluble benzene oxidizing system from a strain of Pseudomonas Axcell, B. C.;P. J. Geary
  8. Annu. Rev. Microbiol. v.46 The electron-transport proteins of hydroxylating bacterial dioxygenases Mason, J. R.;R. Cammack
  9. Iron-Sulphur Proteins Current insights into the active center of spinach ferredoxin and other iron-sulphur proteins Palmer, G.
  10. Biochim. Biophys. Acta v.853 Respiratory proteins from extremely thermophilic bacteria Fee, J. A.;D. Kuila;M. W. Mather;T. Yoshida
  11. Biochemistry v.28 Electron nuclear double resonance spectorscopy of N-15-enriched phthalate dioxygenase from Pseudomonas cepacia proves that 2 histidines are coordinated to the [2Fe-2S] Rieske-type clusters Gurbiel, R. J.;C. J. Batie;M. Sivaraja;A. E. True;J. A. Fee
  12. J. Biochem. v.74 Purification and properties of pyrazon dioxygenase from pyrazon-degrading bacteria Sauber, K.;C. Frahner;G. Rosenberg;J. Eberspacher;F. Lingens
  13. Kor. J. Microbiol. v.24 Isolation of aormatic hydrocarbon-degrading bacteria and genetic characterization of their plasmid genes Kim, C. K.;J. W. Kim;Y. C. Kim;T. I. Mheen
  14. Kor. J. Microbiol. v.30 Molecular cloning of a gene cluster for phenanthrene degradation from Pseudomonas sp. strain DJ77 and its expression in Escherichia coli Kim, Y. C.;K. S. Youn;M. S. Shin;H. S. Kim;M. S. Park;H. J. Park
  15. J. Microbiol. v.30 Nucleotide sequence of phnE gene encoding extradiol dioxygenase from Pseudomonas sp. strain DJ77. Kor. Kim, Y. C.;M. S. Shin;K. S. Youn;Y. S. Park;U. H. Kim
  16. 미생물학회지(투고중) v.23 no.1 Cloning of phnQ Gene Encoding Extradiol Dioxygenase from Pseudomonas sp. Strain DJ77 and Its Expression in Escherichia coli Shin, H. J.;Y. C. Kim
  17. Molecular cloning: a laboratory manual Sambrook, J.;E. F. Fritsch;T. Maniatis
  18. J. Mol. Biol. v.215 Basic local alignment search tool Altschul, S. F.;W. Gish;W. Miller;E. W. Myers;D. J. Lipman
  19. J. Bacteriol. v.175 Metabolism of dibenzothiophene and naphthalene in Pseudomonas strains: complete DNA sequence of an upper naphthalene catabolic pathway Denome, S. A.;D. C. Stanley;E. S. Olson;K. D. Young
  20. Gene v.73 Cloning, nucleotide sequence and characterization of genes encoding naphthalene dioxygenase of Pseudomonas putida strain NCIB9816 Kurkela, S.;H. Lehv slaiho;E. T. Palva;T. H. Teeri
  21. Gene v.127 Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB9816-4 Simon, M. J.;T. D. Osslund;R. Saunders;B. D. Ensley;S. Suggs;A. Harcourt;W. Suen;D.L. Cruden;D.T. Gibson;G.J. Zylstra
  22. J. Bacteriol. v.176 Identification and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase and polycyclic aromatic hydrocarbon dihydrodiol dehydrogenase in Pseudomonas putida OUS82 Takizawa, N.;N. Kaida;S. Torigoe;T. Moritani;T. Sawada;S. Satoh;H. Kiyohara
  23. Gene v.156 The evolutionary relationship of biphenyl dioxygenase from gram-positive Rhodococcus globerulus P6 to multicompo- nent dioxygenases from gram-negative bacteria Asturias, J. A.;E. Diaz;K. N. Timmis
  24. FEBS Lett v.231 Primary structure of protein B from Pseudomonas putida, a member of a new class of 2Fe-2S ferredoxins Morrice, N.;P. Geary;R. Cammack;A. Harris;F. Beg;A. Aitken
  25. Gene v.181 Cloning and sequencing of the genes encoding 2-nitrotoluene dioxygenase from Pseudomonas sp. JS42 Parales, J. V.;A. Kumar;R. E. Parales;D. T. Gibson
  26. J. Bacteriol. v.178 2,4-Dinitrotoluene dioxygenase from Burkholderia sp. strain DNT: similarity to naphthalene dioxygenase Suen, W. C.;B. E. Haigler;J. C Spain
  27. J. Bacteriol. v.264 Toluene degradation by Pseudomonas putida F1: Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli Zylstra, G. J.;D. T. Gibson
  28. J. Bacteriol. v.169 Nucleotide sequencing and characterization of the genes encoding benzene oxidation enzymes of Pseudomonas putida Irie, S.;S. Doi;T. Yorifuji;M. Takagi;K. Yano
  29. J. Biol. Chem. v.271 The broad substrate chlorobenzene dioxygenase and cischlorobenzene dihydrodiol dehydrogenase of Pseudomonas sp. strain P51 are linked evolutionarily to the enzymes for benzene and toluene degradation Werlen, C.;H. P. Kohler;J. R. van der Meer
  30. J. Bacteriol. v.173 Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain P51 Van der Meer, J. R.;A. J. Zehnder;W. M. de Vos
  31. J. Bacteriol. v.173 Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichloro-benzene of Pseudomonas sp. strain P51 Van der Meer, J. R.;A. R. van Neerven;E. J. de Vries;W. M. Vos;A. J. Zehnder
  32. Appl. Environ. Microbiol. v.61 Characterization of biphenyl catabolic genes of gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1 Masai, E.;A. Yamada;J. M. Healy;T. Hatta;K. Kim-bara;M. Fukuda;K. Yano
  33. J. Bacteriol. v.174 Nucleotide sequencing and transcriptional mapping of the genes encoding biphenyl dioxygenase, a multicomponent polychlorinated-biphenyl -degrading enzyme in Pseudomonas strain LB400 Erickson, B. D.;F. J. Mondello
  34. J. Biol. Chem. v.267 Analysis of bph operon from the polycholorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707 Taira, K.;J. Hirose;S. Hayashida;K. Furukawa
  35. J. Bacteriol. v.171 Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strian KKS102 Kimbara, K.;T. Hashimoto;M. Fukuda;T. Koana;M. Takagi;M. Oishi;K. Yano
  36. Biochem. Biophys. Res. Commun. v.202 Identification of the bphA and bphB genes of Pseudomonas sp. strains KKS102 involved in degradation of biphenyl and polychlorinated biphenyls Fukuda, M.;Y. Yasukochi;Y. Kikuchi;Y. Nagata;K. Kimbara;H. Horiuchi;M. Takagi;K. Yano
  37. J. Bacteriol. v.176 Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102 Kikuchi, Y.;Y. Nagata;M. Hinata;K. Kimbara;M. Fukuda;K. Yano;M. Takagi
  38. J. Bacteriol. v.178 p-Cumate catabolic pathway in Pseudomonas putida F1: cloning and characterization of DNA carrying the cmt operon Eaton, R. W.
  39. Appl. Environ. Microbiol. v.62 Cloning, sequencing, and expression of isopropylbenzene degradation genes from Pseudomonas sp. strain JR1: identification of isopropylbenzen dioxygenase that mediates trichloroethene oxidation Pflugmacher, U.;B. Averhoff;G. Gottschalk
  40. J. Ferment. Bioeng. v.81 Cloning, nucleotide sequence, and characterization of the genes encoding enzymes involved in the degradation of cumene to 2-Hydroxy-6-oxo-7-methylocta-2, 4-dienoic acid in Pseudomonas fluorescens IPO1 Aoki, H.;T. Kimura;H. Habe;H. Yamane;T. Kodama;T. Omori
  41. Gene v.174 Sequencing of Comamonas testosteroni strain B-356-biphenyl/chlorobiphenyl dioxgenase genes: evolutionary relationships among Gram-negative bacterial biphenyl dioxygenases Sylvestre, M.;M. Sirois;Y. Hurtubise;J. Bergeron;D. Ahmad;F. Shareck;D. Barriault;I. Guillemette;J. M. Juteau
  42. J. Bacteriol. v.176 Cloning and characterization of a chromosomal gene cluster, pah, that encodes the upper pathway for phenanthrene and naphthalene utilization by Pseudomonas putida OUS82 Kiyohara, H.;S. Torigoe;N. Kaida;T. asaki;T. Iida.;2H. Hayashi;N. Takizawa
  43. J. Bacteriol. v.176 Metabolism of naphthalene, fluorene, and phenanthrene: preliminary characterization of a cloned gene cluster from Pseudomonas putida NCIB9816 Yang, Y.;R. F. Chen;M. P. Shiaris
  44. Ann. N. Y. Acad. Sci. v.721 Cloning and analysis of the genes for polycyclic aromatic hydrocarbon degradation Zylstra, G. J.;X. P. Wang;E, Kim;V. A. Didolkar
  45. Appl. Environ. Microbiol. v.59 NAH plasmid-mediated catabolism of anthracene and phenanthrene to naphthoic acids Menn. F.-M.;B. M. Applegate;G. S. Sayler
  46. Appl. Environ. Microbiol. v.59 Plasmid-mediated minerlaization of naphthalene, phenanthrene, and anthracene Sanseverino, J.;B. M. Applegate;J.M.H. King;G. S. Sayler