Ordered Fragmentation of pDNA induced by PEG-PLL block copolymer -Correlation between Condensation degree and Biological Activity by Cell-Free System-

  • Osada, Kensuke (Department of Materials Engineering, Graduate School of Engineering, The University of Tokyo) ;
  • Doi, Motoyoshi (Department of Materials Engineering, Graduate School of Engineering, The University of Tokyo) ;
  • Shiotani, Tomonori (Department of Materials Engineering, Graduate School of Engineering, The University of Tokyo) ;
  • Yamasaki, Yuichi (Department of Materials Engineering, Graduate School of Engineering, The University of Tokyo) ;
  • Kataoka, Kazunori (Division of Clinical Biotechnology, Center for Disease Biology and Integrative Medicine, Graduate School of Medicine, The University of Tokyo)
  • Published : 2006.10.13

Abstract

The sensitivity of plasmid DNA (pDNA) to S1 nuclease, an enzyme to cleave a single-strand DNA, was dramatically modulated through a supramolecular assembly (polyion complex micelle) with a synthetic block copolymer, poly(ethylene glycol)-b-poly(L-lysine) (PEG-PLL). The pDNA condensed in stoichiometric charge ratio was cleaved into 7 fragments each being 10/12, 9/12, 8/12, 6/12, 4/12, 3/12, and 2/12 of the original DNA length, on the other hand, the pDNA condensed in higher charge ratios (>4), were digested into non-specific manner. Condensation of the pDNA was investigated from two viewpoints that how does the rigid DNA molecules fold and condense and how does the condensation influence their biological activity.

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