Navigation lights used in supersonic aircraft are used to identify the direction and location of the aircraft. The color of the navigation lights and location of installation are defined by aviation law as red for the left wing, green for the right wing, and white for the tail. Navigation lights operate in BRT and DIM modes. BRT is the brightest mode, and DIM is an output with dimmed brightness. Navigation lights serve to prevent aircraft collisions and are very important for stability and location identification. One phenomenon is that the inlet and tail navigation lights flicker abnormally. In this study, fault tree analysis was performed in two stages. The first step was derived from three causal factors, the second step developed five improvements, and the optimal improvement plan was drawn. The navigation lights confirmed that the initial input power was unstable as the main cause of abnormal flickering. As an improved method, the circuit was adjusted to stabilize the initial power, and it was confirmed that flickering did not occur as a result of the tests under the same conditions.