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Complete genome sequence of Runella sp. ABRDSP2, a new mono-aromatic compounds degrading bacterium isolated from freshwater

담수로부터 분리한 단환성 화합물 분해 미생물 Runella sp. ABRDSP2의 전장 유전체 서열

  • Kang, Hye Kyeong (Freshwater Bioresources Utilization Division, Nakdonggang National Institute of Biological Resources) ;
  • Ryu, Byung-Gon (Freshwater Bioresources Utilization Division, Nakdonggang National Institute of Biological Resources) ;
  • Choi, Kyung Min (Freshwater Bioresources Utilization Division, Nakdonggang National Institute of Biological Resources) ;
  • Jin, Hyun Mi (Freshwater Bioresources Utilization Division, Nakdonggang National Institute of Biological Resources)
  • 강혜경 (국립낙동강생물자원관 자원활용기반연구부) ;
  • 류병곤 (국립낙동강생물자원관 자원활용기반연구부) ;
  • 최경민 (국립낙동강생물자원관 자원활용기반연구부) ;
  • 진현미 (국립낙동강생물자원관 자원활용기반연구부)
  • Received : 2018.12.04
  • Accepted : 2018.12.11
  • Published : 2019.03.31

Abstract

The Runella sp. ABRDSP2, capable of degrading mono-aromatic compounds such as toluene, was isolated from freshwater. The whole genome, consisting of a circular single chromosome and three plasmids, was composed of total 7,613,819 bp length with 44.4% G+C contents and 6,006 genes. The genome of strain ABRDSP2 contains many aromatic hydrocarbon degrading genes such as monooxygenase, ring-cleaving dioxygenase, and catechol 1,2-dioxygenase. The complete genome reveals versatile biodegradation capabilities of Runella sp. ABRDSP2.

Keywords

Runella;bioremediation;mono-aromatic hydrocarbon degradation

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Fig. 1. Graphical circular maps of the chromosome and plasmids of Runella sp. ABRDSP2.

Table 1. General genomic features of the Runella sp. ABRDSP2

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Acknowledgement

Supported by : Nakdonggang National Institute of Biological Resources (NNIBR)

References

  1. Grant JR and Stothard P. 2008. The CGView server: a comparative genomics tool for circular genomes. Nucleic Acids Res. 36, W181-W184. https://doi.org/10.1093/nar/gkn179
  2. Kim H, Kang H, Joung Y, and Joh K. 2017. Runella palustris sp. nov., isolated from wetland freshwater. Int. J. Syst. Evol. Microbiol. 67, 676-680.
  3. Larkin JM and Williams PM. 1978. Runella slithyformis gen. nov., sp. nov., a curved, nonflexible, pink bacterium. Int. J. Syst. Bacteriol. 28, 32-36. https://doi.org/10.1099/00207713-28-1-32
  4. Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, and Ostell J. 2016. NCBI prokaryoticgenome annotation pipeline. Nucleic Acids Res. 44, 6614-6624. https://doi.org/10.1093/nar/gkw569