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Genome sequence of Caballeronia sordidicola strain PAMC 26510 isolated from Psoroma sp., an Antarctic lichen

남극 지의류에서 분리한 Caballeronia sordidicola균주 PAMC 26510의 유전체 서열 분석

  • Yang, Jhung Ahn (Department of Marine-Bio Convergence Science, Specialized Graduate School Science & Technology Convergence, Pukyong National University) ;
  • Hong, Soon Gyu (Division of Polar Life Sciences, Korea Polar Research Institute) ;
  • Oh, Hyun-Myung (Department of Marine-Bio Convergence Science, Specialized Graduate School Science & Technology Convergence, Pukyong National University)
  • 양정안 (부경대학교 과학기술융합전문대학원) ;
  • 홍순규 (극지연구소) ;
  • 오현명 (부경대학교 과학기술융합전문대학원)
  • Received : 2017.06.01
  • Accepted : 2017.06.08
  • Published : 2017.06.30

Abstract

Caballeronia sordidicola strain PAMC 26510 was isolated from Psoroma sp., a lichen material, collected from Barton Peninsula of King George Island in Antarctica. The draft genome sequence of PAMC 26510 consisted of 224 contigs and they was 7,872,143 base pairs with 59.7% G+C content. The genome included 7,580 protein coding sequences and 6 ribosomal RNA genes and 46 tRNA genes. The strain PAMC 26510 is also a metabolic generalist as we have observed in previous genomic studies in the arctic strain of Caballeronia sordidicola. The draft genomic sequences of PAMC 26510 had six CRISPR arrays on six contigs, and there were two clusters of CRISPR-associated genes that were linked with respective CRISPR arrays.

Keywords

Caballeronia sordidicola;Psoroma species;Antarctic;lichen

Acknowledgement

Supported by : Korea Polar Research Institute(KOPRI), Ministry of Oceans and Fisheries

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