DOI QR코드

DOI QR Code

Complete genome sequence of Streptococcus intermedius ChDC B718 isolated from a human pulpitis lesion

사람 치수염 병소에서 분리된 Streptococcus intermedius ChDC B718의 유전체 염기서열 해독

  • Park, Soon-Nang (Korean Collection for Oral Microbiology and Department of Oral Biochemistry, School of Dentistry, Chosun University) ;
  • Roh, Hanseong (Macrogen Inc.) ;
  • Lim, Yun Kyong (Korean Collection for Oral Microbiology and Department of Oral Biochemistry, School of Dentistry, Chosun University) ;
  • Kook, Joong-Ki (Korean Collection for Oral Microbiology and Department of Oral Biochemistry, School of Dentistry, Chosun University)
  • 박순낭 (조선대학교 치과대학 구강생화학교실 및 한국구강미생물자원은행) ;
  • 노한성 (마크로젠) ;
  • 임윤경 (조선대학교 치과대학 구강생화학교실 및 한국구강미생물자원은행) ;
  • 국중기 (조선대학교 치과대학 구강생화학교실 및 한국구강미생물자원은행)
  • Received : 2017.04.13
  • Accepted : 2017.04.17
  • Published : 2017.06.30

Abstract

Streptococcus intermedius is a Gram-positive, obligately anaerobic, nonsporeforming, and nonmotile cocci. S. intermedius is a member of oral flora and is endodontic infection, respiratory infections, infective endocarditis, brain abscess, and liver abscess. Streptococcus intermedius ChDC B718 (= KCOM 1545) was isolated from a human pulpitis lesion. Here, we present the complete genome sequence of S. intermedius ChDC B718.

Keywords

Streptococcus intermedius;human;pulpitis

Acknowledgement

Supported by : National Research Foundation (NRF)

References

  1. Basyuni, S., Sharma, V., Santhanam, V., and Ferro, A. 2015. Fatal thalamic abscess secondary to dental infection. BMJ Case Rep. 2015, pii: bcr2015212589.
  2. Cho, E., Park, S.N., Lim, Y.K., Shin, Y., Paek, J., Hwang, C.H., Chang, Y.H., and Kook, J.K. 2015. Fusobacterium hwasookii sp. nov., isolated from a human periodontitis lesion. Curr. Microbiol. 70, 169-175. https://doi.org/10.1007/s00284-014-0692-7
  3. Gnerre, S., Maccallum, I., Przybylski, D., Ribeiro, F.J., Burton, J.N., Walker, B.J., Sharpe, T., Hall, G., Shea, T.P., Sykes, S., et al. 2011. High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc. Natl. Acad. Sci. USA 108, 1513-1518. https://doi.org/10.1073/pnas.1017351108
  4. Gomez, C.A., Gerber, D.A., Zambrano, E., Banaei, N., Deresinski, S., and Blackburn, B.G. 2015. First case of infectious endocarditis caused by Streptococcus intermedius. Anaerobe 36, 53-55. https://doi.org/10.1016/j.anaerobe.2015.10.007
  5. Heimdahl, A., Von Konow, L., Satoh, T., and Nord, C.E. 1985. Clinical appearance of orofacial infections of odontogenic origin in relation to microbiological findings. J. Clin. Microbiol. 22, 299-302.
  6. Ioannou, A., Xenophontos, E., Karatsi, A., Petrides, C., Kleridou, M., and Zintilis, C. 2016. Insidious manifestation of pyogenic liver abscess caused by Streptococcus intermedius and Micrococcus luteus: a case report. Oxf. Med. Case Reports 2016, 1-3.
  7. Kaye, I.D. and Protopsaltis, T.S. 2016. Cervical facet joint infection and associated epidural abscess with Streptococcus intermedius from a dental infection origin a case report and review. Bull. Hosp. Jt. Dis. (2013). 74, 237-243.
  8. Ledezma-Rasillo, G., Flores-Reyes, H., Gonzalez-Amaro, A.M., Garrocho-Rangel, A., Ruiz-Rodriguez, M.S., and Pozos-Guillen, A.J. 2010. Identification of cultivable microorganisms from primary teeth with necrotic pulps. J. Clin. Pediatr. Dent. 34, 329-333. https://doi.org/10.17796/jcpd.34.4.20124lu111544377
  9. Luo, R., Liu, B., Xie, Y., Li, Z., Huang, W., Yuan, J., He, G., Chen, Y., Pan, Q., Liu, Y., et al. 2012. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 1, 18. Erratum in: Gigascience 2015. 4, 30.
  10. Matsui, A., Jin, J.O., Johnston, C.D., Yamazaki, H., Houri-Haddad, Y., and Rittling, S.R. 2014. Pathogenic bacterial species associated with endodontic infection evade innate immune control by disabling neutrophils. Infect. Immun. 82, 4068-4079. https://doi.org/10.1128/IAI.02256-14
  11. Noguchi, S., Yatera, K., Kawanami, T., Yamasaki, K., Fukuda, K., Naito, K., Akata, K., Nagata, S., Ishimoto, H., Taniguchi, H., et al. 2014. Pneumonia and empyema caused by Streptococcus intermedius that shows the diagnostic importance of evaluating the microbiota in the lower respiratory tract. Arch. Intern. Med. 53, 47-50.
  12. Noguchi, S., Yatera, K., Kawanami, T., Yamasaki, K., Naito, K., Akata, K., Shimabukuro, I., Ishimoto, H., Yoshii, C., and Mukae, H. 2015. The clinical features of respiratory infections caused by the Streptococcus anginosus group. BMC Pulm. Med. 15, 133. https://doi.org/10.1186/s12890-015-0128-6
  13. Otto, T.D., Sanders, M., Berriman, M., and Newbold, C. 2010. Iterative correction of reference nucleotides (iCORN) using second generation sequencing technology. Bioinformatics 26, 1704-1707. https://doi.org/10.1093/bioinformatics/btq269
  14. Tran, M.P., Caldwell-McMillan, M., Khalife, W., and Young, V.B. 2008. Streptococcus intermedius causing infective endocarditis and abscesses: a report of three cases and review of the literature. BMC Infect. Dis. 8, 154. https://doi.org/10.1186/1471-2334-8-154
  15. Whiley, R.A. and Beighton, D. 1991. Emended descriptions and recognition of Streptococcus constellatus, Streptococcus intermedius, and Streptococcus anginosus as distinct species. Int. J. Syst. Bacteriol. 41, 1-5. https://doi.org/10.1099/00207713-41-1-1
  16. Yakut, N., Kadayifci, E.K., Karaaslan, A., Atici, S., Akkoc, G., Ocal, D.S., Dagcinar, A., Akbulut, F., Soysal, A., and Bakir, M. 2015. Brain abscess due to Streptococcus intermedius secondary to mastoiditis in a child. Springerplus 4, 809. https://doi.org/10.1186/s40064-015-1608-0