- Volume 27 Issue 10
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Genome-wide Single Nucleotide Polymorphism Analyses Reveal Genetic Diversity and Structure of Wild and Domestic Cattle in Bangladesh
- Uzzaman, Md. Rasel (Brain Korea 21 Center for Bio-Resource Development, Department of Animal Science, Chungbuk National University) ;
- Edea, Zewdu (Brain Korea 21 Center for Bio-Resource Development, Department of Animal Science, Chungbuk National University) ;
- Bhuiyan, Md. Shamsul Alam (Department of Animal Breeding and Genetics, Bangladesh Agricultural University) ;
- Walker, Jeremy (GeneSeek, Neogen Corporation) ;
- Bhuiyan, A.K.F.H. (Department of Animal Breeding and Genetics, Bangladesh Agricultural University) ;
- Kim, Kwan-Suk (Brain Korea 21 Center for Bio-Resource Development, Department of Animal Science, Chungbuk National University)
- Received : 2014.03.03
- Accepted : 2014.06.09
- Published : 2014.10.01
In spite of variation in coat color, size, and production traits among indigenous Bangladeshi cattle populations, genetic differences among most of the populations have not been investigated or exploited. In this study, we used a high-density bovine single nucleotide polymorphism (SNP) 80K Bead Chip derived from Bos indicus breeds to assess genetic diversity and population structure of 2 Bangladeshi zebu cattle populations (red Chittagong, n = 28 and non-descript deshi, n = 28) and a semi-domesticated population (gayal, n = 17). Overall, 95% and 58% of the total SNPs (69,804) showed polymorphisms in the zebu and gayal populations, respectively. Similarly, the average minor allele frequency value was as high 0.29 in zebu and as low as 0.09 in gayal. The mean expected heterozygosity varied from
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