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Refactoring the Code for Visualizing Protein Database Information in a 3D Viewer for Software Reusability

  • Chun, Yoo-Jin (Department of Computer Science, Ewha Womans University) ;
  • Ham, Seong-Il (Department of Architectural Engineering, Yonsei University) ;
  • Yang, San-Duk (Department of Computer Science, Ewha Womans University) ;
  • Rhie, Arang (Department of Computer Science, Ewha Womans University) ;
  • Park, Hyun-Seok (Institute of Bioinformatics, Macrogen Inc.)
  • Published : 2008.03.31

Abstract

We have released five Java Application Programming Interface (API) packages for viewing three-dimensional structures of proteins from the Protein Data Bank. To this end, the user interface of an earlier version has been refactored in an object-oriented fashion, in which refactoring is the process of changing a software system to improve its internal structure, without altering the external behavior. Various GUI design and features have been provided conveniently thanks to the Model-View-Control (MVC) model, which is an architectural pattern used in software engineering. Availability: The source code and API specification can be downloaded from https://sourceforge.net/projects/j3dpsv/.

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